Acipenser ruthenus (sterlet): 117404091
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Entry
117404091 CDS
T07327
Name
(RefSeq) tetratricopeptide repeat protein 37-like isoform X1
KO
K12600
superkiller protein 3
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117404091
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117404091
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
117404091
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_8
TPR_19
TPR_11
TPR_17
TPR_16
TPR_CcmH_CycH
TPR_12
TPR_14
ANAPC3
TPR_9
ARM_TT21_C
TPR-S
Fis1_TPR_C
ARM_TT21_5th
TPR_COPA_B
HEAT_Nup120
TPR_30
COG4_N
Motif
Other DBs
NCBI-GeneID:
117404091
NCBI-ProteinID:
XP_033862672
LinkDB
All DBs
Position
2:complement(6619728..6675632)
Genome browser
AA seq
1561 aa
AA seq
DB search
MSNKEVKSILKNAREAIKNKEYKEALKHCKAVLKLEKNNYNAWVFIGVAASELEQPDQAQ
AAYRKAVELEPEQLLAWQGLTNLYEKNNLPGFKEELPGVYQKLLDLYERSDREKWYEVCR
KLVDIYHQERRHLEVARSWYKLISVKQEEAGNEELHQLWKWMVQLLADSQEDQDNETQQL
LITAFENAMSSAGKLPGEDHQRLSTEYIKCLSKLPHEEVKMKDACESMLSLYPALTFPLE
VLCMHFIQTGCCSGEAVQYFSKLLEMDSVSGPGHIGLGIKAFQDKKYQEAADNLTQGLKQ
TGSSIQAWYHLAQTQLKMHSYEECIVSCKKALKLSEGEVQWTKLLLRLKTKALVGSSGAS
CAEEAMDTLDQLSDTDDDPELLALKGSVYLQRGLIDQALQVATDLLSSHPNQPEAHALRG
HIHITQEDYVRAEQSFQKAIEANPTSGEYYYCLGLVYWHMGEETRRDKTKAHTHLLKAAK
LDAYLGAVFRYLGHYYRDIVQDKGRARGCYKKAFDLDRNDAESGAAAVDLSMELGDMESA
LAILRTVTEQASAGTAKWAWLRRGLYNLKMNQHSQAIADLQAALRADPKDSICWECLGEA
YLNRRGFTAALKAFTKANELNPESIYSIFQIAAIKQILGKYKEAVTEYMQTIQKRDDYVP
ALKGLGECYLSMARRALKDYLDGRAVDYLEQAIESLFRAVQHRPDLSCLWKLLGDACTTV
HTVSPSRGNVTVWGPLSQRNPTSQKQTLNKFEVLSLGGRCYGRALKLMPESANLWCDLGI
NYYRQAQHLMSEGKENETPELLEKSLQCLRKAVMLDSRNLLYWNVLGVVALCKGIENLAL
AQHSFIKSIQAEANNVSAWTNLGSLYLKNENIELAHEAFKVAQSLEPSYVNCWIGQALIA
EAVGSYETMDLFRHTTELSIHTEGVKGYAHWVCSTLLDKTNRNSELYLYNIVQMNAITAA
QVALSKYTERIRTDAAAFTMLGYLNEHLHLKKQAVEAYQRAVQLLQPTGGKEAVIFALRN
YGRTLCTTGQYDQAIQAYTSTPVTELSDITGLALAFFKKGFLQESARAYEKALSVVTTEK
EKAYILTALALLEHRQNKVDSAKTLLFKCSMLKEPSVESLQSLCALGLVNRDATLATAAL
NELLKRTDQKEGVHERCLLTCATFALQGNNVAVQRQASKAIHSNPGDPALWALLSRLVPQ
YHPRIAKGGAVAGRVACHFSMTQGKRALLYSGVNQLAAGMHSGEDQRSNSLKTIQRAALL
SPEDPGVWASLMAACHTENTACYLSSAAPKRAGLEETFMKAISKKVKAEESHPVSYSQCL
ESWALRQALSGLKQAGQTSAAESLCTKVLGIQPEQPDVFLLLRQAQCEQLLQSHRQLPEA
VLVELRKAVMSNYTSVSAWHWLAEVYRTQGLMVAAVMCYRQSLQMASQQGDFSGKLASLL
RLALLALAPCMANVSSSEWKDMVQEATSEALKITFCPLAVLLQALLQFSIKMGARETRRL
LERVVYQPGYPETVASVARWYLLRHLHAKHDDELIDALMDHARANADSRLEELHKQLCSS
S
NT seq
4686 nt
NT seq
+upstream
nt +downstream
nt
atgtctaacaaagaggtgaagtcaatcttgaaaaacgccagggaggccataaagaacaag
gaatacaaggaagccttgaaacattgcaaagctgttctgaagcttgagaagaataactac
aatgcctgggtgtttatcggagtggctgcgtccgagcttgagcagcctgatcaggcacag
gctgcatacaggaaggctgtggagctggagccagagcagctactggcatggcagggtttg
accaacctgtatgaaaaaaacaatctaccaggattcaaggaagagctacccggtgtgtac
cagaaactgctggacctgtatgaacgttccgacagggaaaagtggtacgaggtgtgcagg
aaactggtggacatttaccaccaggagaggagacacctggaggtggcaagaagctggtat
aaactgatctcagtaaaacaggaagaggcggggaatgaggagcttcaccagctgtggaag
tggatggtccagctgctggcagacagccaggaggatcaggacaatgagacacagcagctt
ttgatcaccgctttcgaaaatgccatgagttctgcaggcaagcttccaggagaagaccat
caaaggctttccaccgaatacattaaatgtttatcaaaactgccacatgaagaggtgaag
atgaaagatgcttgtgaatcaatgctgtctttgtatcctgctttaacgtttcctctagag
gtcctctgtatgcactttatacagacaggctgctgcagtggagaagccgtccagtatttc
tcaaagctgctggagatggactctgtgagcgggccgggccacatcggactggggatcaaa
gcctttcaggacaagaaataccaagaggctgcggacaaccttactcagggacttaagcaa
acaggttccagtatacaagcctggtatcacttggcacagacacagctgaaaatgcacagc
tatgaagagtgcattgtttcgtgtaagaaagctctgaaactcagtgaaggagaggtccag
tggacaaagctgcttctcagattgaaaaccaaagcgttagtgggaagcagtggagccagt
tgtgccgaggaggcaatggacacccttgatcagctgtcggacacagatgatgaccctgag
ctgcttgctttaaagggcagtgtttatttacagagggggctgattgaccaagcactccag
gtggccactgatcttctgtcttcccacccaaatcagccagaggcacacgctctcaggggc
catattcacatcacccaggaagactatgtccgggcagaacagagtttccagaaagcaatt
gaagcaaatcctacctcgggggagtattactactgcctcggactggtttactggcacatg
ggagaagagaccaggagagacaagaccaaagcgcatacccatctactcaaggcagccaag
ctggatgcgtacctaggggcagtgttccgctacctgggtcactactatagagacattgtc
caggacaagggccgagcccgaggctgctacaagaaagcctttgacctggacaggaatgat
gcagagtctggagccgcggccgtagatctcagcatggaactgggagacatggagtctgcc
ctggctatcctgagaacagtgacggagcaggcaagtgcagggacagcaaagtgggcttgg
ctgaggcggggtctgtacaacctgaagatgaaccagcattcccaggcaatcgctgatttg
caagctgctctgagggctgacccaaaggattcgatctgctgggagtgtctgggagaggcc
tacctgaatagaagagggttcaccgcagctctgaaggctttcaccaaagcaaacgaactg
aatccagaatccatttacagcatcttccagatagcagccatcaagcaaatcctgggcaaa
tacaaagaggctgtcactgagtacatgcagactatccagaagagagatgactatgtccct
gcactaaaaggtctaggcgagtgctatctttccatggcccgaagagcacttaaagattat
ctggatggaagagctgtggactatctggaacaagccatcgagtcccttttcagagcagtc
cagcaccgtccagacctgtcctgtctgtggaagctgcttggtgacgcctgcaccacagta
cacaccgtatccccctccagaggaaatgtcaccgtttggggccctcttagtcagcggaac
ccaaccagccaaaaacagaccttgaacaagtttgaagtcctgagtctaggaggacggtgc
tatggccgagctctgaaacttatgccagaatctgctaatctctggtgtgaccttggaata
aactattaccgtcaggcacagcatctcatgtcagaagggaaggagaacgaaacccctgag
ctactggagaaatctttacagtgtctcagaaaagcagtgatgctggacagtaggaatctt
ttgtactggaatgtgcttggagtggttgctctgtgtaaaggtattgaaaacctggctctt
gcccaacactcattcatcaaatcgatacaggctgaagcaaacaatgtatcagcttggaca
aacctaggcagtttatatctcaagaatgaaaatattgaactcgctcatgaagcctttaag
gtagcccagtctctggagccttcgtatgttaactgctggatcggtcaggcccttattgca
gaggcggttggcagctatgaaacaatggatctgttcaggcacaccacagagcttagcatc
catactgaaggtgtgaaaggttatgcccactgggtgtgctccacgctgcttgataagaca
aacaggaattcagagctttatctctacaacattgtgcagatgaatgctattactgccgct
caggttgctttgagcaaatacacagagagaatccgcacagatgcagccgctttcaccatg
ctggggtacctgaacgagcacctgcatttaaaaaagcaggctgtggaggcctaccagagg
gctgttcagttgctgcagcccacgggaggaaaggaggcggtgatctttgctttgagaaac
tacggaaggactctgtgcaccacaggtcaatacgatcaggccatccaagcctacacatcc
acgccagtcacagagcttagtgacatcactggacttgcgctggctttcttcaagaagggt
tttttacaggagagtgcaagagcttatgagaaagctttgtcagtggtgactactgaaaag
gagaaggcttacatcctgaccgccctggcgttgctggagcacaggcagaacaaagtggac
agtgccaagactctgctctttaaatgctctatgttgaaggagcccagtgtagaaagcctg
cagtctctgtgcgcactgggcctggtcaatcgagacgctaccctggctaccgcagccctc
aacgagctcctgaagcgtacagaccaaaaagagggggttcacgagcgctgtctcctcacg
tgtgccacgttcgccctgcaggggaacaacgtggctgtccaaagacaggcttccaaagcc
atccatagtaaccctggagatcctgcactttgggctctattatcaagattggttcctcag
taccaccccagaattgctaagggtggagcagttgctggacgagtggcttgccattttagt
atgacccaaggaaagcgtgcgctcctgtacagtggggtaaaccagctggccgcaggcatg
cactcgggagaggaccagcgtagtaactcactgaagaccattcagagggcagcattactg
agtccagaggaccctggtgtgtgggcttctttaatggctgcctgtcacactgaaaacaca
gcgtgctatctgagcagcgcagcaccaaaaagagcaggcttggaggaaacatttatgaag
gcaatctcaaagaaggttaaagcagaggaaagtcatcctgtttcctactcccagtgcctt
gagagctgggctcttcgacaggcgctgtccgggctaaagcaggcaggacagacctcagca
gcagaatccctctgcaccaaggttcttggtatccagccagagcagcccgatgtgttcttg
ctgctcagacaggcacagtgtgagcagctcctgcagtcacacaggcagctccctgaagct
gtcctggtggagctcaggaaggctgtgatgtctaactacacatctgtatctgcttggcat
tggctagcagaggtgtacaggactcagggactgatggtggctgcagtgatgtgctacagg
cagagtctgcagatggcctcccagcagggcgatttcagtgggaagctggccagtctgctg
aggctggctcttctggcactcgcaccctgcatggcaaatgtttcaagtagtgagtggaag
gacatggtccaggaagcaaccagtgaagccctgaaaatcacattctgtcctctggctgtc
ctgctacaggcactgctgcagttcagcattaaaatgggagccagggaaactcgtcgactg
ttggaaagagttgtgtaccagcctggatacccagagacagttgcttcagttgcccgctgg
tatctcctcagacatctacatgccaaacatgatgatgaactcattgatgcactgatggac
cacgccagagctaatgcagattccagactggaggaactacataagcagctttgctcttcc
tcttag
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integrated database retrieval system
