Acipenser ruthenus (sterlet): 117405208
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Entry
117405208 CDS
T07327
Name
(RefSeq) collagen alpha-1(VIII) chain-like
KO
K23455
collagen type VIII alpha
Organism
arut
Acipenser ruthenus (sterlet)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
117405208
NCBI-ProteinID:
XP_033863971
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Position
9:25789395..25829658
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AA seq
744 aa
AA seq
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MQDKVMTMPLIPLRLLTMALHLALFRTTLAGVYYGMKQIPQQQHHQIQQLPHMPVGKESL
PMQHPGKDMSHMQYGKEIPMIPQYRKEIPQVPLPMGNEMPRKEVKGIIPRGEMGPPGEPG
HKGLPGPQGPPGMPGRGLPGQPGKPGPQGPPGYPGIGKPGMPGLPGQPGGMGFPGPKGEL
GPGGEGGPMGMPGPQGLPGPPGLPGIGKPGGQGLPGQPGPRGEPGHKGPPGLPGLPGPKG
EKGIGLPGLPGLQGPVGPPGQPGQGGLPGIGKPGLNGLPGAPGGLGKPGPPGEPGLQGPG
GQGGQPGPPGLPGVGKPGHDGLPGRPGFPGGKGELGPPGLPGGPGLPGYGKPGFPGPKGE
RGMGGMPGAPGPKGEKGYGGIPGMVGPLGAIGPPGLPGPMGPPGGVGFPGPKGEGGAMGP
QGQMGPKAEPGLPGLPGQPGFPGEGGQPGQRGLPGPIGPKGDNGHKGLPGLPGAPGLPGP
KAERGLPGEQGQQGPSGIPGIKGPSGPIGPPGLPGPKGELGLPGQPGIPGVGKPGPPGFL
GPQGEPGRIGQPGQPGQPGQPGPPGLPGPPAQAPGLGQIMPEMGPGLDGVKTPPGGYKKG
KQGAVIGENDGLLEMPAFTAELTSPFPHVGSPVKFDKLLYNGRQNYNPLTGLFTCEIPGI
YYFAYHVHCKGANVWIALYRNNEPVMYTYDEYKKGFLDQASGSAVLPLRPGDKVYLQMPS
EQASGLYAGQYVHSSFSGYLLYPM
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgcaagacaaggtcatgactatgccactaattcctcttcggctgctcactatggccctc
cacctagcccttttcaggacgaccctcgctggggtgtactatgggatgaaacagataccc
cagcagcagcaccaccagatacaacagttacctcacatgccagtgggcaaagagagcttg
cccatgcagcacccgggcaaggacatgtcccacatgcagtacggcaaggagatcccaatg
ataccccagtacagaaaggaaataccccaggtgcctctgcctatgggaaatgaaatgcca
aggaaagaagttaaaggtattatcccgaggggtgagatgggcccccctggagaacctggc
cacaaaggtcttccaggaccacagggccctcctggaatgccaggccgtggcttaccagga
cagccaggaaaacctggcccgcaaggacccccaggatatccaggcattgggaaacctggg
atgccgggattgccaggtcaaccaggcggaatgggatttccaggtccaaaaggcgagtta
ggccctggtggagagggagggccaatgggtatgccaggaccacagggacttccagggcca
ccaggtctgcctgggattgggaaacccggtggccagggattaccaggtcaaccagggcct
agaggcgaaccggggcacaaaggaccaccagggctgccaggattgccagggccgaaaggc
gaaaagggcattggtctgccagggttaccagggctgcaagggccagtgggtccaccaggt
caaccaggtcaaggcggtctcccagggatagggaaacctggcctaaatggactccctggg
gccccaggaggacttggaaagccagggcctccaggagagccaggattacagggaccagga
ggacaaggaggacaaccaggaccaccaggccttcctggtgttggtaaaccagggcatgac
gggttaccagggcggccagggttccctggaggaaaaggagaacttggtccaccaggcttg
cctgggggccctggtttacctggctatggcaaaccaggttttcctgggccaaagggagaa
cgagggatgggcggcatgcccggggcacccgggcctaaaggagaaaagggttatggaggc
attcccggaatggtaggacccctaggagcaataggtccacctggtctgcctggtcccatg
gggccgccaggaggtgttggctttccaggtccaaaaggggagggtggggcgatggggcca
caagggcaaatgggtccaaaagcagagcctggcctgccaggtttgccaggccaaccaggg
ttcccaggagaaggaggtcagcctggacaaagaggtttaccgggccccataggacccaaa
ggggataatgggcataaaggattgccgggtcttcctggggcccctggcttgccagggcca
aaagcagaaagaggattgcccggtgaacaaggtcagcagggcccaagtggaattccagga
attaagggcccaagtggtccaattgggcctccaggtttaccaggaccaaagggagaacta
ggtcttcccggccagcccggcattccaggtgttggtaaaccaggacctccaggattcctt
gggcctcaaggggaaccaggacgcattggacagcctggacagcctggtcagcctggccaa
cctggccctccaggactacctggccctcctgcccaagcaccaggcctcggtcaaatcatg
ccagagatgggtccaggcctggacggtgtgaaaaccccacctgggggctacaagaaaggg
aagcagggagcagtaataggggaaaatgatggcctcctggaaatgcctgcctttactgct
gagctaacatcaccattcccacatgtggggtcccctgtaaagttcgacaaactcctctat
aacggcaggcagaattacaaccccctgaccggcctctttacctgcgagatccctgggata
tactactttgcctaccatgtccactgcaaaggtgccaacgtctggattgcactgtacagg
aacaatgagccagtgatgtacacatatgatgagtataaaaagggcttccttgaccaagcc
tctggcagtgctgtgctcccgctcaggccaggagacaaagtgtacttgcagatgccatca
gaacaggcatcaggactctatgcaggccaatatgttcactcatctttttctgggtattta
ttatatccaatgtaa
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