Acipenser ruthenus (sterlet): 117405423
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Entry
117405423 CDS
T07327
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117405423
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arut03021
]
117405423
03019 Messenger RNA biogenesis [BR:
arut03019
]
117405423
Transcription machinery [BR:
arut03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117405423
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117405423
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
DUF6980
Motif
Other DBs
NCBI-GeneID:
117405423
NCBI-ProteinID:
XP_034778411
LinkDB
All DBs
Position
8:6287888..6304020
Genome browser
AA seq
1713 aa
AA seq
DB search
MSDDAAREDACQEYQSSLEDLTFNSKPHINMLTILAEENLNFAKDIVAIIEAQIAKAPAT
EKLPVLYLVDSIVKNVGRDYLEAFTKNLVTTFICVFEKVEENTRKSLFKLRSTWDDIFSL
KKLYALDVRVNTIDPAWPIKPLPPNVNTSSIHVNPKFLNKPTEEIATPRTSAPQIPATTV
ASESPKDASQEQIIRQQLLAKQKQLIELQQKKLELELEQTKAQLAATQYGSTTKSHVIAT
SPATTVCKSTPQATVQPENTWPVRQHQDAKIYTRDPRLNRSGQQLGQVKDSVVKKGKSQQ
GTTLHQPDKTNVMTEKTSKQEKSKSVKKDTAVSEEKSKSPSPLMKAFQSKGKTVDLENVK
LPEINKRDPRLRKHLHEKATDKEEEVKEKKRCLDKERDDPKSSEHRSANTRNKLNGIATK
HERNENAEKQDLKLSSRSNVKKRSRSPPVLHSPKRKERRSPKRTRRSISSSPPPKIGKAR
QTGVKHSHVEDLGQHTNVREERNPVKKNIVQDPRRPKRAQEERALESRDLHPAKLHPEPK
GNTKRWKSGWVENKNLKQTEDHLAHGKLGPLRHRVSSWPNNQRIPALHMPKQHRLSVDAN
LQIPEELNSASKRDLLKKANKRLSDGEISQEEFLVVAHQIKQLFQYQEEKQRSISWDNTT
EEMHFVAKKKPLLSTPPLQQGDMSDAEITYFEHKAKLRRTQVQHLQDNELWDATESQDDN
YSSDELHYVKESEPGKGQFGARTGDQFNKRELLNEGPRRRSPVMASRPPVDNKTLSQDNK
KIDKHPHLGTKNSEVFIKGASNKRGEVHRQKGRPGYEFKKRDSDPRGSSAERQKFKTEGG
REEHILPYSERFPHKRSAHEPREKSKYAEAPGSRLGGPAGNRRFGGSGEGSKYDGPARQS
SSRTDEPNTKHEGSSSQPCLPFDGSTDHPEGPGQSSVSVFDAPASPKIESLQSQRFDGTT
GYDHSLPVSEGDGPRSQHVSSRLDVTPPSQGRVGAQGPIRCDPIGQTPPPMTEALPGQQA
PPRYDGQPAPQRYDGPPVQQPLLRFDEAPGQRGQPRFDGPHRRQGPDRFDGSPGPLVHPG
FNGPPQGQSGPGRFDGPPVQQTQIRFDGPPGQQGPGRFDPQGQQGPGRFDGQQGPVRFDG
PTVQQGPGRFNGPMGPQGPMRFDGPPGQQCPGRFDGPMGQQGSGRFDGPMGPQGPRRFDG
PPGQSPMRFDGPVGQQGSVRFDGPSGQPGSMRFDGPPMQQGMPRFECPTSQPGPIRFCGP
PGHQGPLRPPGPQGLQRFDGPQGQGPPRVDEHSTLCFDNQQPPSSFNMPNLRFSEPSHAY
SGAPQPFQGQQNMSQVSNFNGPPGAGGSNFSNPFCRPVAPFFNPGPPMPSIGNMNTVTAS
VPMGNIIPQQPHAPFGQGQPFMASLNPVPFGQPAPESHFGQVDVNDLLSKLLSTGIIKPT
QTETPPNDSNVPSQTQSVVEEEDDEEQDEDQNIPDLTGFVIEDMKQRYDSVINRLYTGIQ
CYSCGMRFTTSQTDIYADHLDWHYRQNRSEKDISKKVTHRRWYYSLTDWIEFEEIAELEE
RAKSQFFEKVHEEVVQKTQEAAKEKEFQSVKAAADVVDETCEICQEQFEMYWEEDEEEWH
LRDAIRVDEKTYHPSCYEDYKNTSSFVDCTPSPSTAPLENPLNISIKQEQEQSTCSSVKQ
ETSDASSSCKEETVSEETKVKVEAETQEASENT
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgacgcggcgagagaagatgcgtgtcaagagtaccaatcgtctctggaagac
ttgactttcaacagcaaaccacacatcaatatgctgaccattctggcggaggagaacctg
aatttcgccaaggatatcgtcgcaattattgaagcacaaatcgccaaggcacctgccaca
gagaagcttccagttttatacttagtggactccattgtgaagaatgttgggagagactat
cttgaggcgttcacaaaaaacctagttactacgtttatttgcgtttttgagaaggtggag
gagaacactagaaaaagtttattcaaattgcgctccacgtgggatgatattttctctttg
aagaaactttatgcattagatgtcagagtgaacaccatagatcctgcttggcccatcaaa
cctttacccccaaatgtgaatacgtcaagtattcatgtgaatccaaaatttttaaacaaa
ccgacagaggaaatagccaccccaagaacaagtgcaccacaaattccagcaacaacagtt
gcatctgaatctccgaaggatgcgtctcaggagcaaataataaggcaacagctgctagca
aagcaaaagcagttgattgagcttcagcagaagaaattagaactagagcttgaacaaact
aaggctcaactggctgctactcagtatggatctaccaccaagtcccacgttattgctaca
agcccagctacaactgtatgcaaatcaacaccacaggcaacagtgcaacctgaaaataca
tggcctgttcgacagcaccaagatgcaaaaatatatacaagagatcctcggctaaataga
tcaggtcaacagctgggacaggtgaaggattcggtagtgaaaaagggaaagtcacagcag
gggactacgttgcatcagcctgacaagacaaatgtgatgactgaaaaaacaagcaaacag
gaaaaatctaagtcagtaaaaaaagacactgctgtttcagaagaaaagtctaagtcacca
tccccattaatgaaagcttttcaaagcaagggtaaaacggttgacttggaaaatgtgaag
ttaccggaaataaataagagagacccaaggttaaggaaacatcttcatgaaaaggctact
gataaagaagaggaagttaaagagaagaaaaggtgtttagacaaagagagagacgatcct
aaaagctctgaacacagatctgcaaacactagaaataaacttaacgggattgcaacaaaa
catgaaaggaatgaaaatgcagaaaaacaagatttaaaattgagtagtagatccaatgta
aagaaaaggtcccgatcaccaccagtattgcattccccaaagagaaaagaaaggcgttca
cccaaaagaacaagaagaagcatttcatcctcccctccccctaaaattggaaaagccagg
caaactggggttaaacattctcatgtggaggatttagggcagcatacaaatgttagggaa
gaaaggaatcctgttaaaaagaatattgtacaagatcccagaagaccaaaaagagcacaa
gaggaaagggctctagaatccagggatctgcatcctgcaaagttgcatccagagccaaaa
gggaatacaaagcgatggaagagtggatgggtggaaaataaaaacttgaaacagacagaa
gatcatttggcacatggaaaactaggtcctctgagacatagagtaagctcatggcctaat
aaccaaaggatccctgcccttcacatgccaaagcagcaccggttaagtgtagatgccaat
ctgcaaattccagaagaactgaactctgctagcaaaagagaccttctcaaaaaggccaac
aaaagactttctgatggagaaattagccaggaagagttccttgtcgttgctcaccaaatc
aaacaactgtttcaatatcaagaggaaaaacagagatcaatatcttgggacaacacaacg
gaagagatgcattttgtagcgaaaaagaagccactgttgtctacaccacctttgcaacag
ggggatatgtcagatgctgaaataacttattttgagcataaagccaagttgaggagaaca
caggtccagcatcttcaggataatgaattatgggacgcaacagagagtcaggatgacaat
tactcaagtgatgaattgcattatgtaaaagaaagtgaaccaggcaaaggacaatttgga
gcaaggactggtgatcagtttaacaaaagggaactgttaaatgaaggaccaagacgacgt
tctcctgtaatggccagtagacctccagtagataacaaaacattgtcacaagacaataaa
aagattgacaagcatcctcatttaggaacaaagaattctgaagtttttattaaaggggca
tctaataaacggggagaagttcacaggcaaaaaggaagacctgggtatgaattcaagaaa
agagacagtgatcctcggggtagttctgctgaaaggcaaaagttcaaaaccgaaggtggc
agagaagaacatattttaccgtatagtgaaaggtttccccataagagatcagcccatgaa
cctcgtgaaaaatcaaaatatgcagaagcccctggatcaagattgggaggccctgcagga
aatagaagatttgggggatctggtgaaggatcaaagtatgatgggcctgcaagacagtcc
agttcaaggactgatgaaccaaacacaaaacatgaaggctcttctagccagccttgtcta
ccctttgatggatcaacagatcatcctgaaggacctgggcagtcatctgtttcagtgttt
gatgcaccagctagtccaaaaattgaaagtcttcaaagccaaagatttgatggcactacc
ggttatgatcattcccttccagtgtctgagggtgatggtcctagaagccagcatgtttct
tccaggcttgatgtcactcctccaagtcaaggcagagttggcgcacaaggtccaataaga
tgtgaccccataggacagacacccccaccaatgacagaagcactcccaggacagcaggct
ccaccaagatatgatggacagccagctccgcagagatacgatggaccaccagttcaacaa
ccattgctgagatttgatgaagcaccaggccaacgtggtcagccgagatttgatgggcca
catagacgtcaaggaccagatagatttgatggttcgcccgggcctctagttcatccggga
tttaatggaccaccacaggggcaatcgggtccaggcagatttgatgggcctccagtacaa
caaactcaaattagatttgatgggccaccagggcagcaaggtccagggaggtttgatcca
cagggacagcaaggtccagggagattcgatgggcagcagggtcctgtaagatttgatgga
ccaacagtgcagcaaggtcctggaagatttaatgggccaatgggtcctcaaggaccaatg
agatttgatggcccaccaggtcagcaatgtcctggaagatttgacggaccaatgggtcag
caaggttcagggaggtttgatgggccgatgggtccgcaaggtccaaggagatttgatgga
cccccaggacaaagtccaatgaggtttgatgggccagtgggtcagcaaggttcagtgaga
tttgatgggccttccgggcagccaggttcaatgaggtttgatggccctcccatgcagcag
ggaatgccaagatttgaatgtccaactagccaaccaggtcctataaggttctgtgggcct
ccaggccatcaaggtccactaagaccaccaggcccacaaggtcttcaaagattcgatgga
ccccagggacagggtccaccaagggttgatgaacattcaacgctctgttttgataatcaa
caaccaccttcaagcttcaatatgcctaatctgagattcagtgaaccttctcatgcatac
agtggagcacctcaaccgtttcaagggcaacaaaacatgtctcaagtgtccaattttaat
gggccaccaggggctggaggatccaatttttccaatcctttttgcagaccagttgctcca
ttctttaatccaggtcctcccatgccctcaattggaaacatgaatacagttacagcctct
gtgccaatggggaatattattccacagcagcctcatgctccatttggtcaaggacaacca
tttatggcatctctgaaccctgtgcctttcggtcaaccagctcctgagagtcattttgga
caagtggatgtcaatgacctgttatcaaaactgctttctactggaataataaaacccaca
cagactgaaacacctccaaatgactctaatgtaccttctcagacacagtctgtggttgag
gaagaggatgatgaggaacaagatgaagatcaaaatatcccagacctcaccggctttgta
attgaagacatgaaacagcgatatgacagtgttattaatagactgtacactggaattcag
tgttattcgtgtgggatgcggttcacaacttcacaaaccgacatatatgcagaccacttg
gactggcattatcgacagaaccgatcagaaaaagatatcagcaagaaagttacacacaga
agatggtactacagcttgacagactggatagaatttgaggaaatagctgagctggaagag
cgtgcaaagagtcagttctttgagaaagttcacgaggaagttgtacagaaaacccaggaa
gctgctaaagaaaaggaattccaaagtgtaaaggcagcagcagatgttgtcgatgagact
tgtgaaatttgccaggaacagtttgagatgtactgggaagaagatgaggaagaatggcac
cttagagatgccattcgtgtggatgaaaaaacatatcacccctcctgctacgaagattac
aaaaatacatcgtcatttgtggactgcactccatcacctagtacagcgccgctggaaaat
cctttaaatatttcaatcaagcaagaacaagaacagtccacgtgttccagtgttaaacaa
gaaacaagcgatgcctccagcagctgcaaagaagaaaccgtttcagaggaaacaaaagta
aaagtggaggctgaaacacaagaagccagtgaaaatacttag
DBGET
integrated database retrieval system
