Acipenser ruthenus (sterlet): 117405756
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Entry
117405756 CDS
T07327
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-8-like
KO
K16499
protocadherin delta 2
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
arut04515
]
117405756
Cell adhesion molecules [BR:
arut04515
]
Cadherins
Protocadherins
117405756
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
117405756
NCBI-ProteinID:
XP_034779667
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Position
9:4271971..4285656
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AA seq
1091 aa
AA seq
DB search
MEFIPGSASPILISLWFNFGFCQCPFLLRPGTFRVIPVPFLLQHGVHSGFCQSHSCCSLE
FIPGSLSPIPAAAWGSYRVLSVPFLLQPGVQSGVSQSHSCCSLGFIPGYPSPIPVAAWGS
QRGLPVPFLLQPGVHTVNGKTAQYITYEEDAAGTEIGNLAQDLKIDPADDPHTSFRFMQQ
PSSSLIRMRETDGLLTIGERIDREHICGQSPECLITFDVVTFSKEKFQLIHVEVEVKDIN
DNSPQFPHNESYIEMSESAAVGTRFPLDIAVDQDVGPNYIENYYISFNSHFGIEVRSRED
GVKFAELVLAKGLDREKEDSYTLQLSAADGGNPAKSGSVTVHIKVLDFNDNSPVFDHSLL
KVELYEDAPVGFLLCKLNAVDLDEGINGDIVYGFNDQVSAEIRQVFQIDPSSGRISLKGL
VDYETKKSYELDIHAYDLGLNSVPAVCKVIVDIVDVNDNAPEISIKPMTSISAGVAYITE
SAAEDSFVALVSTSDRDSGANGYVHCSLQGHEHFKLQEAYGDSFMIVTTTTLDREKISEY
NLTVIAEDLGSPPFKTIKQYTIRISDENDNAPLFSKPVYEVSVLENNVPGSYITTVVARD
PDLGHNAKVTYKLIDAEVHGGAPLSTFVTVDAASGSIYSVRSFNYELIKKIEMTIQASDE
GSPQLSTTALIRVKIVDQNDNSPYITYPILQNGSVDVRMPNNAPSGYLALQIKARDADEG
MNSELSYRILQDQQKLFTLNKQTGELSLKMGLAYVSGDTVKVIVAVNDNGRPALSSTATF
NFIVTEMSPFDEQIVVVLQSSDEESPEWGISLIVIIVLGGGCALLLITIVAVAITCKNSQ
ILQNCDTKKDMKHRHFETNPMTLSGSQKDASVYFGSRTIINDRVGNSEIGEDARCLYEKE
RRGDSETKVFIPSTSFIHKPFKPVSIWRDEKYSLNLSGVPNTDQLSIKDSGKGDSDFHDS
DSETSGDGSSKTQTTFNAVQNGTFHPRDIRLPDSKSTNCTVPTNDPSTYGNGYSIAYSCA
PIYNQLTAWKASYYHTNIPKTKGLLQAIPRTGTLPAQFYHHNPRETTHIVPQQDSQQFLE
PTAVSEIATSF
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atggagttcattccgggttctgccagtcccattttgattagcctgtggttcaatttcggg
ttctgccagtgcccattcctgctgcggcctgggacattccgggttatcccagtcccattc
ctgctgcagcatggggttcattccgggttctgccagtcccattcctgctgcagcctggag
ttcattccgggttctctcagtcccattcctgctgcagcctggggttcataccgggttctc
tcagtcccattcctgctgcagcctggggttcaaagtggggtctcccagtcccattcctgc
tgcagcctggggttcattccgggttatcccagtcccattcctgttgcagcatggggttca
cagcggggtctcccagtcccattcctgctgcagcctggggttcacacagtgaatggtaaa
acagcacaatatattacctacgaagaggatgctgctggaactgagatcggaaacctagca
caggatttgaagatcgacccagcggacgacccccacacaagttttcgcttcatgcaacaa
cccagctcttctctgattcgaatgagagagactgacggactgcttaccatcggggaaaga
atcgacagggagcacatctgcgggcagtcccctgaatgtctaattaccttcgacgtggtc
accttttccaaagagaagtttcaactgattcatgtggaggtggaagtcaaggacattaat
gacaactcgccgcaattcccacacaatgaaagctacattgagatgtctgagagtgctgca
gtaggtactcgatttccattagacattgctgttgaccaggatgtgggccccaactacatc
gagaactactacatctcgtttaacagtcacttcggcattgaagtgcgcagcagagaggat
ggggttaaatttgcggagcttgtgttggctaaaggactggacagagaaaaagaagattct
tacacacttcagctgtcagctgcagacggaggtaacccggcaaagtcaggttcagtaact
gtgcatatcaaagtgcttgactttaatgataacagcccagtgtttgatcacagtctgctc
aaagtggaattgtatgaagatgctccagtggggtttctcctgtgcaagttaaacgctgtt
gacctcgatgagggtataaatggagacattgtttatggctttaatgatcaagtgtctgca
gagatccgacaagtctttcaaatagacccctcttcgggacgtataagcctaaaaggtctt
gtggattacgagacgaagaaaagttacgaactggatatccacgcatacgatttggggctg
aactctgtcccagctgtttgtaaagttatagttgacattgtagatgtaaatgacaacgct
cctgagataagtattaaaccaatgacatctatcagtgcaggagttgcctatataactgaa
agtgccgcggaagacagctttgtcgctctggtcagcacctcggacagggattcgggtgca
aatggctacgtacactgcagcctccaaggacacgaacatttcaaactgcaggaagcttac
ggggacagtttcatgattgtcaccacaacaacccttgatcgagagaagatttcagaatac
aacctcacagtgattgctgaagacctggggtctcctccatttaaaaccattaaacagtac
accatcaggataagcgatgaaaacgacaacgcgcctcttttcagcaagccagtttacgag
gtttcggttctagagaataatgttccgggctcatacattaccaccgtggtggcccgagat
ccggatctgggtcacaatgctaaagtcacttacaaacttatagatgcagaagtgcatgga
ggtgctcctctgtctacctttgtgactgtggacgcagcctcagggtcgatatattctgta
agatctttcaattacgaattaattaaaaaaatagaaatgacaatccaagcaagtgacgaa
ggatctccacaactatcaaccactgctctgatcagggtaaaaatagtagatcaaaatgat
aattcgccttatattacgtatcctattttacaaaatggatctgttgatgtgcgcatgccc
aataatgcgccatctggttaccttgctctccagatcaaggcaagggatgctgacgaaggg
atgaactctgaactgtcctacagaattttgcaagatcagcaaaagttgttcaccttaaac
aaacaaacgggggaattgtctctgaaaatgggactagcctatgtctctggtgacactgta
aaagtaattgttgcagtaaacgataacggaagaccagcactgtcatccactgctactttt
aacttcattgtaactgaaatgtctccatttgacgaacagatagtggttgttctacaatca
agtgatgaagagtccccggagtggggtatttcattaatagttatcattgtgctaggcggg
gggtgtgctttgctgctcatcacaattgttgctgttgcgatcacatgcaaaaacagtcaa
atattacaaaactgcgacaccaagaaagacatgaaacacaggcactttgaaacaaatcca
atgacattaagtggctcccaaaaggacgcatcggtatattttggatcgagaactatcata
aatgaccgagttggaaactctgaaattggagaagacgcaagatgcctatatgagaaggag
cgcagaggagattcagagacgaaggtgtttataccgagtacctctttcattcacaaaccg
tttaaaccagtttccatatggcgagatgaaaagtacagtttaaatctcagtggcgttcca
aacactgatcagttgagtataaaggacagtggcaaaggagacagcgacttccatgacagt
gattctgaaaccagcggagacgggtcgagcaaaacacagaccactttcaatgcagtccag
aatggtacatttcacccaagagatattagacttcccgactctaaatcaacaaactgcacg
gttccaaccaatgacccttcaacctatggcaatggttactcaattgcatactcctgtgca
cccatatataaccagctgactgcctggaaagcatcatattaccatacaaatattcccaaa
accaaaggcttgctacaggccattcctagaacaggcacattgccagcccagttctatcac
cataacccaagagaaacaacccacattgtgcctcagcaagacagccagcagtttctagaa
cccactgcagtatctgagattgccacttctttctaa
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