Acipenser ruthenus (sterlet): 117407272
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Entry
117407272 CDS
T07327
Name
(RefSeq) syntaxin-binding protein 5-like isoform X1
KO
K08518
syntaxin-binding protein 5
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
arut04131
]
117407272
Membrane trafficking [BR:
arut04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
117407272
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
117407272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LLGL
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_THOC3
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_HPS5
Beta-prop_RIG_2nd
WD40_Prp19
Beta-prop_IFT140_1st
WD40
ANAPC4_WD40
Beta-prop_WDR5
Beta-prop_WDR3_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
EIF3I
Lgl_C
Beta-prop_VPS8
Synaptobrevin
Beta-prop_NUP159_NUP214
RAB3GAP2_N
CFAP43_N
Motif
Other DBs
NCBI-GeneID:
117407272
NCBI-ProteinID:
XP_033867966
LinkDB
All DBs
Position
8:48688416..48874265
Genome browser
AA seq
1262 aa
AA seq
DB search
MKKFNFRKVLDGLTASSPGSASGTSTCPGGTAGVPAVGVPPKETEVQETLASENFQICKT
VRHGFPYQPTALAFDPVQKIVAIGTRTGGVRILGRPGVDCYCQHDSEAAVLQLQFPINEG
ALVTACADDTLHLWNLRQKRPAILHSLKFNRERITFCHIPFQSKWLYVGTERGNTHVVNI
ESFILSGYIIMWNKAIELATKTHPGPVVHLSDSPRDEGKMLIGFESGTVVLWDLRAKKPD
FRFYYDEAIHSVSWHHEGKQFMCSHSDGSLTMWNLKNTAKPFQITFPHAKSQRDGKKPDP
CKPILKVEYKTSRSSEPFIIFSGGLSYDKAGRRPSLTIMHGKSITVLEMDHPIVEFLTLC
ETPYPNEFQEPYAVVVLLEKDFIVVDLTQSHFPIFENPYPMDIHDSPVTCTAYFADCPPE
LIPALYAVGSKHKKQGYSNKEWPVSGGTWTLGTQTYPEIIITGHADGSIKFWDGSAITLE
MLYKLKTSKVFEKQKVGEGKQVAEIVEEDPYAIQMISWCPESRILCVTGISAHVILYRFS
KHEATTQIVSLEVRLQNDVEDIITPEATENISPYTEPSQPITGSPSNVSPEGIKDSIPCL
KVKSRPVRMPQGYQAELVIQLVWVDGEPPQQIASLAVNSAYGLVAFGNSNGLAVVDFIQK
TVLLSMGTIDLYGSSDPYPRQLRSPRRSKQLPADTFCMRGLTNIYSDSKKRIRTSHQSLS
ELSDSPVSLELERCKSPTSVPPPTTSHNDPRTFPDTPANVKASHCSPVFYLLDNVKGPRK
LSLPTDLKTDLDNVNGHCTSPTSQPCSTGKRVSATEGAKLNRWGPSRPPFRKAQSAACME
ISLPASHTEGYASRRAMLQQLHGISIYSQDEHHSASYTWSEKESRDNSFSRSRSSSVSSI
DKESKETITALYFMDSYGRKNDGTLSPCLWVGTSLGVVLVISLNLPSGEEQRQSEPVMVA
PSGTVLMLKGAVLTFSSVDCAGGLIHPPYEVWRDPNSMDDNEKPCKRKLVTCSPSSSQDM
GDYHFAVICSEKQAKVYSLPSQNCLYAHSITESSFVLRADVVTVCNSVCLACFCANGHIM
TLSLPSLRPMLDVNYLPLTDMRIARTFCFTNGGQALFLSSPTEVQRITFSQEMCENLQDM
LGELFTPVETPEAQNRGFLKGFFGGSGQTFDREELFGEAAAGKASRSLAQHIPGPGSMEG
MKAAAGGVAGDLARARIALDERGQRLGELEDRTAAMMGSAESFSKHAHELMLKCKDKKWY
QL
NT seq
3789 nt
NT seq
+upstream
nt +downstream
nt
atgaagaagtttaattttcgaaaggttttagatggcttgactgcctcctccccaggcagc
gctagcggaacttcaacatgcccaggtgggaccgctggtgtccctgcagtaggagtgcct
cccaaggaaacagaagttcaagaaaccctcgcttcggaaaactttcagatctgtaagacg
gtacgtcatggcttcccatatcagcccactgccttggctttcgacccagtgcaaaaaatc
gtggccattggaacaagaacaggaggtgtacgaatattgggcagacctggcgtcgattgc
tattgtcagcatgacagcgaagcagctgttctacagctccagtttccaatcaatgagggt
gctcttgtcactgcatgtgctgatgacactcttcacctctggaacctgcgacaaaaacgt
ccagcaatcctccattcactcaaattcaacagagagcggattaccttctgccatattcca
ttccaaagtaaatggctgtatgtgggtacagagagaggaaatacacatgtagtaaatatc
gagtccttcatcctgtcaggatacatcatcatgtggaacaaggcaatagaactagcaaca
aagacccaccctggccctgtggtgcacttaagtgacagtcccagagacgagggaaagatg
ctgataggctttgaaagtggaacagtagtgttatgggacctccgagcaaaaaaaccagac
ttcagattttactatgatgaggccattcattctgtaagctggcatcatgaaggcaaacag
ttcatgtgcagccattccgacggcagtctgaccatgtggaatctgaaaaacactgccaaa
cctttccagatcacctttccacatgcaaaaagccagagagatggaaagaaaccagaccca
tgcaaaccaatcctgaaagtggaatacaagacatcaaggagcagtgagccatttattatc
ttctctggagggctgtcatatgataaagcaggtcgaagacctagcttgacaatcatgcac
ggtaaatctattacagtgctggaaatggatcaccccatagtggaattcttaacactttgt
gaaactccttatccaaacgaattccaggagccttatgcagtagttgtgctgcttgaaaag
gactttatcgttgtggacctaacacaaagccactttcctatttttgaaaacccatatcct
atggatattcatgactctccagttacctgcacagcatactttgctgactgccctccagag
ctaatccctgccctttacgctgtaggttccaaacacaaaaagcaaggctacagcaataag
gaatggccagtcagtggtgggacctggacactgggaacacagacatatcctgaaattatt
attacagggcatgctgatggatcaataaagttttgggatggatctgccataacccttgag
atgctgtacaagctgaaaacatccaaggtgtttgaaaagcagaaggtgggagaggggaag
caggtagcggagattgtggaagaggacccatatgccatacagatgatcagctggtgtcct
gaaagcaggatcctatgtgtcacaggcatctcagctcacgtcatactttacagattcagt
aaacacgaggctactactcaaatagtgtcactagaggttcggcttcagaatgatgtggag
gacattatcactccagaggcgactgagaatatctctccatacactgagccttcccagccc
attacaggaagccccagcaatgtctctccagagggaataaaggacagcatcccctgcctc
aaggtgaagtctcgtccagtaagaatgccccaaggctaccaggcagaactggtaatacag
ctggtgtgggtagatggagagcctccccaacaaatagcaagcctggctgtgaactcagcc
tatggcttggttgcgtttgggaattccaatggcctagctgtggtggatttcatccagaag
acagttctgctcagcatgggaaccattgacctttacggttccagtgacccatacccgcgt
cagcttcgctctccacgcagaagcaagcagctcccagcagacaccttttgcatgcgcggc
ctgactaacatttattcagattcaaagaaaaggattcgtacgtcccaccagagtctatct
gagctgtctgacagccctgtttccttggagctagaacgctgcaagtctcccacatcagtt
cctcccccaaccacatctcataatgatccccgcacctttccagacaccccagcaaatgtg
aaagcaagccactgcagcccagttttttacttgctggacaatgttaaaggaccaagaaag
ttaagtctgccgacagatcttaagactgatcttgataatgtaaatggacattgcactagc
cctacctcacagccctgcagcactgggaagcgtgtctctgccactgaaggtgctaaactg
aaccgctggggtcctagccgaccccctttccgaaaagcacagtctgctgcttgcatggag
atctctttgcctgcttcccacacagaaggttacgcatcaagacgggcaatgcttcagcaa
ttacatggaatcagtatttactcgcaagatgaacaccactctgccagttacacttggagt
gagaaagaaagtcgggacaattccttcagccgctcccgtagctccagtgtgtccagcatt
gacaaggaatccaaggaaaccataacagcactgtacttcatggactcgtatgggcgtaag
aacgatgggaccctctcgccgtgtctttgggtcgggaccagcctaggggtggtactggtc
atctctttaaacctgccttctggtgaggaacagaggcaaagtgaaccagtcatggtggct
cccagcgggaccgtgttgatgcttaaaggagcggtgctgacgttttcatctgttgactgt
gccggtgggctgatccaccctccctacgaggtgtggagggacccgaacagcatggatgac
aatgagaaaccttgcaagcgtaaacttgtaacctgctcaccctcctcttctcaggatatg
ggggattaccattttgcagtcatctgttcggagaaacaggccaaggtctactcactgcct
tcccaaaactgcctttacgcgcatagcatcacagagtcgtcgtttgtgctaagggcagat
gttgttacagtttgtaatagtgtctgcctggcttgcttctgtgcaaatggacatatcatg
acactaagtttgcctagccttcggccaatgctggatgtaaactatctacctttgacagac
atgaggattgctcgaactttctgctttacaaatggagggcaggcgctgttcctgagctct
cctacggaggtccagcgcattactttcagccaggagatgtgtgaaaatctgcaggacatg
ttgggagagttgtttacaccagtggaaaccccagaggctcaaaacagaggatttctaaaa
ggattctttggaggaagtggacaaacatttgacagggaagaactatttggggaggcagct
gcaggaaaggcctcgcggagtcttgctcagcatattcctggccctgggagcatggagggg
atgaaggctgctgctggaggtgtagctggagacctggcacgggcccgcatcgctttagat
gagagagggcagagactgggagaactggaggatcgcacagctgccatgatggggagcgca
gagtcattttccaaacacgcacatgagctgatgctaaaatgcaaggacaagaagtggtat
cagttgtaa
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integrated database retrieval system
