Acipenser ruthenus (sterlet): 117409057
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Entry
117409057 CDS
T07327
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117409057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
arut03041
]
117409057
03009 Ribosome biogenesis [BR:
arut03009
]
117409057
Enzymes [BR:
arut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117409057
Spliceosome [BR:
arut03041
]
Complex A
U2 snRNP components
U2 related factors
117409057
Complex B
117409057
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
117409057
Ribosome biogenesis [BR:
arut03009
]
Eukaryotic type
90S particles
Helicases
117409057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
SRP54
nSTAND3
Flavi_DEAD
AAA_29
Motif
Other DBs
NCBI-GeneID:
117409057
NCBI-ProteinID:
XP_033870500
LinkDB
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Position
2:complement(99756666..99793220)
Genome browser
AA seq
761 aa
AA seq
DB search
MSKRHRLDLGDDYSSKKRTSSEGKDRDRDRERDDRSKDRDRDRDRERDREKDMKPPGISL
SPIVPGGGLPTLKQAVIHQQINPFTNLPHTPRFYDILKKRLQLPVWEYKERFNDILVKHQ
SFVLVGETGSGKTTQIPQWCVDMVRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLG
QEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMG
VLKEVVRQRSDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEA
AIRTVIQIHMCEEEEGDVLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKIIPLYSTLPP
QQQQRIFEPPPPKKASGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVE
SLLVTAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQL
KKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKM
VIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAF
KQNHESVQWCYDNFINYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRALV
TGFFMQIAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIK
PEWLVKIAPQYYEMSNFPQCEAKRQLERIVAKFQTKEYSQY
NT seq
2286 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacggcaccgcttagatttgggagacgattattctagtaagaaacggacatct
tctgaaggaaaggatagagatcgtgatcgggaacgtgatgaccgatcaaaggacagggac
agggacagagatcgcgaacgtgacagagaaaaggacatgaaaccacctggtatctctctc
agtcctattgtgcccgggggtgggttgccaactttaaaacaagcagtaattcatcagcag
attaatccgtttactaatttgccgcacactccaagattctatgacatcctgaagaagagg
cttcagcttcccgtatgggaatacaaagaaagatttaacgatattctcgtaaaacatcaa
agctttgtattagttggtgagactggttctggcaaaacaacacagattcctcagtggtgt
gttgatatggtgcgctcacttcctggacccaagcgtggtgtggcctgtacccagcccaga
agagtggctgccatgagtgtagcccaaagagtggcagatgaaatggatgtcatgctggga
caagaagttgggtattccattcgatttgaagactgcagcagtgcaaagactatccttaag
tatatgactgatggtatgttacttcgagaagcgatgaatgatccgcttctggaacggtat
ggtgttatcatccttgacgaagcccacgagcgtacactagccacagacattttaatggga
gtcttgaaagaagtggttagacaaagatcggatttaaaggttattgtcatgagcgccacg
ttggatgctgggaaattccaagtctactttgataattgtccgttgttaacaattcctggt
cgcacacaccctgtggagatcttttataccccagaaccagagcgagactacttggaagca
gctatccgaacagtaatacaaatccacatgtgtgaagaggaggaaggagacgtcttgcta
tttcttacaggtcaagaggaaattgatgaagcctgtaaacggataaaacgagaaatagat
gacttgggacctgaggttggagacattaaaatcatccctctgtattccaccctaccacct
cagcagcagcaaaggatctttgaacctccccctccaaaaaaagcaagtggtgcaatagga
agaaaggttgttgtttcaacaaatattgctgaaacgtccctgacaattgatggtgttgtg
tttgtaattgaccctggatttgctaaacaaaaggtgtacaatcctcgaatccgagtggag
tccttgctggtgactgctataagcaaggcttctgctcagcagagagctggtcgtgccggc
agaacccgaccagggaaatgtttccggctgtatacagaaaaggcctataaaaccgaaatg
caggacaacacataccctgagattttgaggtccaatttgggctctgttgtgttgcaacta
aagaaacttggtatagatgacttggtgcattttgatttcatggacccaccagctcctgaa
acactgatgagggccctggaactattgaattatctcgctgccctgaatgatgacggtgat
ctgactgagttgggatccatgatggcagagtttccattggatccacagctagccaagatg
gttattgccagctgtgaatttaattgttccaatgagatcctctccattacagcaatgttg
tcagtcccacagtgttttgttcgtccgacggaggcaaagaaagctgctgatgagtccaag
atgaggtttgctcacatagatggagatcacttgactctactaaatgtctaccatgctttc
aaacagaaccatgagtcagttcaatggtgctatgacaatttcattaactacagatcactg
atgtctgctgacaatgtacgtcagcagctctccagaataatggacagattcaacctgcct
cgcagaagcacagagttcaccagtcgagattactatatcaacatacggagggccttggtc
actggcttcttcatgcagatcgcgcatttggaaaggacagggcattacctgacagtgaaa
gataaccaggtggtacagttgcatccctccactgttcttgaccacaaacctgagtgggtc
ctctacaatgaatttgtactcacaacgaagaactacattcgaacatgcacagatataaaa
ccagagtggttggtaaaaatagctccccagtactacgaaatgagcaacttcccgcagtgc
gaagcaaaaagacagctggagcgcattgttgccaaatttcaaaccaaggaatattcacag
tactga
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