Acipenser ruthenus (sterlet): 117410023
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Entry
117410023 CDS
T07327
Symbol
vps8
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog isoform X1
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117410023 (vps8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
arut04131
]
117410023 (vps8)
Membrane trafficking [BR:
arut04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117410023 (vps8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_VPS8
TPR_Vps8
zf_RING_Vps8
VPS8_N
Clathrin
TPR_Vps41
Beta-prop_WDR36-Utp21_1st
TPR_VPS8_2
WD40_CDC20-Fz
zf-RING_Vps41
zf_RING_Vps8_fungal
Beta-prop_WDR5
zf-RING_11
zf-C3H2C3
Beta-prop_EML_2
EIF3I
ANAPC4_WD40
Beta-prop_HPS5
WDR55
Beta-prop_WDR3_1st
zf-RING_UBOX
Motif
Other DBs
NCBI-GeneID:
117410023
NCBI-ProteinID:
XP_033872254
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All DBs
Position
10:32212939..32344902
Genome browser
AA seq
1402 aa
AA seq
DB search
MSESPETRSLVSASSQLNLTDIDAIDDKEFDIPQVDTPPTLESILNEPEDEDEPFVLEDT
SLLNIESLDTHSCETSSLASSDSGDRTHMKRRKRLAESNSTVHGSVLRHSILKGISAQIV
SAADKVDAGLPTAVTVSNVIAVGTSHGLALVFGKDPNQALRLCLGSTAVGAQYGAVSALS
INNDCTRLLCGFAKGQITMWDLANGKLLRTITDAHPPGTAILHIKFTDDPTLAICNDSGG
SVFELAFRRVMGMRTCESRCLFSGSKGEVCCIEPLHAKKELRDHPIAQYCLLAMASLTKI
LVIGLKPSLKVWMTFPYGKMDPASVPLLAWHFVAVQKEINPMLVFCRGDAVHFLLVKKEE
SGAIHVSKSRQLHLHYDLISLTWINSRTLVLLDSAEKLHVIDRPSQEELDNVDIAEVELI
YNSSHFKSLATGGNVSQALALVGEKACYQSVCSYGGQIVYLGTKSVHVMTLRNWRERVDH
LLKQERFLEALSLAWSFHEGTARAVVGLFGDPNKRKGVVADKMTEILFQYADRSLKKCPE
QGKIQVMEQHFQDMVPVMVDYCLLLQRTDLLFNQIYSKLGENSVAKGVFLECLEPYILSD
RLTGLAPHVMKDLLVHFQDNGMMDSIEACIVHLDITSLDIQQVVQMCWEHHLHDAMIYVY
NSGMNDYINPMEKLLQVISPLLRAGKSLSDEKVTMGNKLLVYISCCLAGRAYPLGDIPED
LVPLVKNQVFEFLVRLHSVEAAPDEEVYPSIRTLLHFDTREFLNVLALTFEDFKNDKQAL
EYQQRIVDILLQVMVDNSDFTPSQVGCLFTFLARQLSKPDNTLFVNRKLFDQVLEFLCSP
DDDSRHTERQQVLLELLHAGGVVQFEEKRLISLAEKAEFYQICEFMYEKKHLYDKIIYCY
LKDPLRKGEVFNYIHNILSIPGYSPEEKQSVWDEAMEHLKELVSIDPSKAADLVAIHFAD
EIRNIIDKLEEDYLLFQFLKCLLDPREGSQNQRLLRLNPDLYELYIELLCRFSPAQVTEF
LQTSEHYRMEEAVQITRKHNLHEPLSYLLEKKGDVHGAFLVLLETLKHNLSLLTDGNEAV
SNELDPMRSVEISLEETIALCQRCSNCLNQQQREALWFPLLETMMSPQKLLKTTACQHTS
ESLKQMTMQVLSSMTGFIALPSIIQRILQDPVYGRGKLSEIQGLILGMLETFSYEQTLLE
TTTSLLNHDLHWSLSHLRAAVSKGLHPRLDHCSICLQHYRRKLEADDEIIIFSCGHLYHC
QCLQSKECGVQGEGPPGWSCYKCTSSSKGGWPGERAVAEVRRGRTTSLAQIKVTSVHNTT
FGDARGRKLLSDLALDPQQTQAFDQLRCIYRGPSRLAILTELSHSRGSEKPSLLNPTQPS
SGSIFHSENFQLKLSPPPLMEE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgtcggagtcgccagaaacacgcagtctagtgtctgcttcatctcaactcaatctgaca
gacattgacgcgattgatgacaaggagtttgatattccccaagtagataccccgcccact
ctagaaagtattcttaacgagcctgaagatgaggatgagccctttgttctggaggacacg
tcccttttgaacatcgagagcctcgacacacactcctgtgagacctcctccttagccagc
tcggacagtggagaccgcacacatatgaaaagaagaaagaggttagctgagagcaactcc
acagtccacggctcagtcctccggcacagcatcctgaaaggaatctctgcgcagattgta
tcggcagcggataaagtggatgctggtttgcctactgcagtaactgtgtccaatgttata
gctgtggggacatcgcacggtcttgcactggtgtttggaaaagatccgaaccaggccctt
cgtctgtgtctgggcagcacggctgtgggagctcaatacggggccgtgtccgcactcagc
atcaacaacgactgcaccaggctgctctgcggctttgctaaaggccagatcacaatgtgg
gatctggcgaatgggaagctgctacgaaccataacagatgcccaccctcctggaacagct
attctgcacatcaagtttacagatgacccgacactagctatttgcaacgacagtggagga
tctgtgtttgagctcgccttcaggagggtgatgggaatgaggacgtgtgaatccaggtgt
ctgttcagcggctccaagggggaagtctgctgcatagagcctctgcacgccaagaaggaa
ctgagagatcaccccattgcacagtactgcctactcgccatggcctcattgacaaaaatt
ttagtcatcggattaaaaccatctctaaaagtgtggatgacgtttccttatggcaagatg
gatcctgccagtgtccccctacttgcctggcatttcgtggcagtgcagaaggagattaac
cccatgctagtgttctgcagaggagatgcggttcacttcctccttgttaaaaaggaggag
tctggtgctatacatgtcagcaaatcgagacagcttcacttgcactatgatctcatcagt
ttaacatggatcaactcgcggacgctggtgctgctggacagtgcagagaagctgcatgtc
attgatcggccgagccaggaggagctggacaatgtggacattgcagaggtggagctcatc
tacaacagcagccacttcaaatcactggccaccgggggcaatgtcagccaggcactggcg
ctagttggagagaaggcctgctaccagtcagtgtgcagttacggtggccagattgtctat
ctgggaacaaagtctgtccatgttatgacactaagaaactggcgagagagagtggatcat
ttactgaagcaggagcgtttcctcgaggcgttatcactggcctggtcattccacgagggc
acagccagagctgtggttgggttgtttggagatccaaacaagagaaagggtgtagtagct
gacaagatgactgagatcctctttcagtatgcggaccggtcactaaagaagtgtcctgaa
cagggtaaaatccaagtgatggagcagcattttcaggacatggtgcctgtcatggttgat
tactgtctcctgctgcagcgcacggacctgctgtttaaccagatctactcgaagctgggg
gagaactcagtggcgaagggggtgttcctggagtgtctggagccgtacatcctgagtgac
cggctgacaggccttgccccccacgtcatgaaggacctgctcgtccacttccaggacaat
ggcatgatggacagcatcgaggcctgcatcgtccacctggacatcaccagtctggacatc
cagcaggtggtccagatgtgctgggaacaccatctgcatgacgctatgatctacgtctat
aacagcggtatgaatgactacatcaatcccatggagaaactactccaggtgattagcccg
ctgctgcgagcagggaagtctctatcagatgaaaaagtcacaatgggcaacaagctgctg
gtatatataagctgctgtctggctggacgtgcttatcccctgggtgatatcccagaagac
cttgttcctctggtaaagaaccaggtgtttgagttcctggtcaggctgcactctgtggaa
gccgcccctgatgaagaggtgtacccctccatccgcacactgctgcactttgataccagg
gagttcctaaatgtgctggctctgacttttgaagacttcaagaatgataaacaagcgctt
gagtaccagcagcggattgtggacatcttactgcaggttatggtggacaattcagacttc
actccctcccaggtgggctgtctcttcaccttcctcgccaggcagctctccaagcctgac
aacactctctttgtgaacaggaagctctttgaccaggtccttgaatttctctgtagtcct
gatgacgactccagacatacagaaagacagcaggttctgttggagctgcttcatgctgga
ggagtggtacagtttgaagagaagcggctcatcagtctggctgagaaggctgagttctat
cagatctgtgagttcatgtacgagaagaagcacttgtacgacaaaatcatctactgctat
ttgaaagatcccttaagaaagggtgaggtttttaactatatccacaacatcctttctatc
ccgggatacagccctgaggagaagcagtctgtgtgggatgaagctatggagcaccttaag
gagctggtatcgatcgacccgtccaaagcagcagatttggttgccattcactttgcagac
gagatccgcaacatcattgacaagctggaggaggactacttgctgttccagtttttgaag
tgtcttctggaccccagggaaggctcccagaaccaaaggctgctgcggttgaaccctgac
ctctatgagctgtacattgagctgctgtgtcgcttcagccctgcgcaggtcactgagttt
ttacaaacctcagagcactaccgaatggaggaagcagttcagattactcggaaacacaac
ctacatgagcccttgtcatacttgctggaaaagaaaggagatgtgcacggagcttttctg
gtcctgcttgagactttgaagcacaatctgtctttgctcactgatggtaatgaagctgtc
agtaatgaattggaccccatgcgaagtgttgagatttctttggaggaaaccattgccctg
tgccagcggtgttctaactgcctgaaccagcagcagagagaggctctttggttcccatta
ctggaaacgatgatgtcaccacagaagctactgaagaccacagcatgtcagcacacctcg
gaatctctgaagcagatgacaatgcaggttctgagcagtatgacaggattcattgcattg
ccttcaattatacaacgcatcctacaggatcccgtctatggcagaggcaagctgtctgag
atccagggtctaatccttgggatgctggagaccttcagttatgaacagactctcctggag
acaaccaccagcctcctgaaccacgacctgcactggtccctgtcgcacctgcgggccgcc
gtgagcaagggcctccaccctcgcctggaccactgcagcatctgcctgcagcactacagg
aggaagctggaggcagatgacgagatcattatcttcagctgtgggcacctgtatcactgc
cagtgtctgcagagtaaggagtgcggagtgcagggcgaagggccgccaggctggagctgt
tacaagtgcacctccagcagcaagggaggctggccaggggagagggctgtggcggaggtt
cgacggggcaggaccacctccctggcacagattaaagtgacatctgttcataacacaacc
tttggggatgctcgtggaagaaagttgctgtcagatctggctctagaccctcagcagact
caagcctttgaccagctccgatgcatctacaggggaccatccaggctcgccatcctgacg
gagctctctcattcgcggggcagcgagaagcccagtctgctgaacccaacccagcccagc
tcaggcagcatcttccacagcgagaacttccagctcaaactctcccctccaccactgatg
gaggagtga
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integrated database retrieval system
