Acipenser ruthenus (sterlet): 117410071
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Entry
117410071 CDS
T07327
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117410071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117410071
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117410071
mRNA degradation factors
5'-3' decay
Decapping complex
117410071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
117410071
NCBI-ProteinID:
XP_034769299
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All DBs
Position
45:3614194..3631219
Genome browser
AA seq
725 aa
AA seq
DB search
MKRNNSLSLPSLCPMQSLEEDCPLEEEREALHGLVDEDDDIDQFNDDTFGSGAIDGDWRE
EHDRLAELDEKVGGTSPLQAPPPPACCCSPAPSSELDSLLLGGDENLAHSLSKLVLSAET
DYRELEDPAIMRAGLQQHKRAPLQPRSQLNSGSIWDNAMGLGGMSIPKLSQVQDSPLMSI
IKEVGLPKRPPMGRDEGRDLSERAPPPRSTSPVIGSPPVRAVPIGTPPKYPIGHNLNQQV
LCPTPVHVRASMQQRFSSAFNDRMSPNQLLNIANSQLRGHAFPPGVGPVLTQLQRAQMIG
AGQRVLLTQRMQQQTGRGQNGAGGDRPQRLGGSQDRRRDPYSNLMTSREKEWVSRIQMMQ
LQSTDPYLDDYYYQNYFEKLEKRPSPMDSNGDAHKREHTKLITPQVAKLEHAYRPVQFAG
SLGKLTVSSVNNPRKMIDTVVMTTRSDDEEKKEKQVWNKRRQILYTVEKTYSLLLDIQDF
ERKYLQTPEEERGALLEERRSKVGEMFENLRGRQTDADRNRFSDDHFLQIMRVRKGKLLV
SRLLPFLSMEHAVAVVMATARNLPYIAKKDAQDEVLPWLIEPFSIVIQHLASGPLTELLQ
DLSGLPGSPSELNSSTGNQQQAQSHTSTGQLGKVLTSKFGLTLLYLILSQGERLQSADSN
TELMENNRWTELVFGVTAELLNIPEASLAQPVLTPPSLLSFFSHYVDRQRLNLLQDKLQL
SPKPR
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaggaataattctctctccctcccttctctctgtcccatgcagtctctggaggaa
gactgccccctagaggaggaaagggaggcgctacacggcttagtcgatgaagacgatgat
atcgaccagtttaatgatgatacgttcggatcgggagccatcgatggggactggagggaa
gaacacgaccgattggccgagctggatgagaaggtgggcgggacttcccctctgcaggcc
cctcctcctcctgcctgctgctgttcccccgcccccagctcagagctggacagtctgctg
ctgggaggggatgagaacctggcccacagtctgagcaagctggtgctgagcgcagagaca
gactacagggaactggaggatcccgcgatcatgagagcagggctgcagcagcacaagagg
gcgcccctgcagcccagatcccagttgaactctggcagtatttgggacaacgcgatggga
ctgggaggaatgagcattcccaaactgtcgcaggtccaggacagccccctcatgtcaatc
atcaaagaagtggggcttcccaagaggccaccaatgggacgggacgaggggagggacttg
tctgagcgagccccgcccccgcgctccacctcgcccgtgattggcagcccgccggtgagg
gcggtacccatcgggactccgcccaagtatccgattggtcacaatctcaaccagcaggtt
ctctgtccgacacctgtgcacgtcagagcatctatgcaacaaagattttctagtgctttc
aatgaccgcatgtctcctaatcagcttctcaacattgcgaattcccagctccgtggccac
gccttccccccgggcgtcggccctgtcctcacccagctacagcgagcgcagatgattgga
gcaggccagcgagtcctgctgacccagagaatgcagcagcagaccgggaggggtcagaac
ggagctgggggggacaggccgcagcggctcggggggtcccaggacaggcgtcgggacccc
tacagcaatctgatgacgtcgagggagaaggagtgggtgtcccgcattcagatgatgcag
ctgcagagcacagacccctacctggatgactattactaccagaattattttgagaagtta
gagaagcgtccttctccaatggactccaacggagatgctcataagagagaacacacgaaa
ctcatcacaccccaagtggctaaactggagcacgcataccgaccagtgcagtttgcaggg
tctctaggaaagctcaccgtctccagcgtcaataacccacggaagatgattgacaccgtg
gtcatgacgacgcgctccgacgatgaggagaagaaagagaaacaagtctggaacaaacgg
agacagattctgtacacggtggagaagacgtacagtctgctgctggatattcaagacttt
gagaggaagtacctccagactccggaggaagagaggggagcgttgctggaggagcgccgc
tccaaagtgggggagatgttcgagaatctgcgagggaggcagaccgacgccgacagaaac
agattctcggacgatcacttccttcagatcatgcgggtccggaaagggaagctgctggtc
tccagactcctccccttcctgagcatggagcacgctgttgcggtcgtcatggcgacggcc
cggaacctgccctacatcgccaagaaagacgcgcaggacgaggtgcttccctggctgatt
gaacccttctctatagttatccagcacttggccagcgggccgcttactgaattgttacaa
gacctcagtgggctaccggggagcccctccgaactgaacagctctactgggaaccagcag
caagcccagtcgcacaccagtacagggcaactgggcaaagtgctgacaagcaagtttggc
ctcacgctgctctacctgattctcagtcaaggagagaggttgcagagtgccgactcaaac
acagagctcatggaaaacaacagatggacagagctggtgtttggagtgactgcggagctg
ctgaatatcccagaggcctctctggctcaacctgtcttaacccccccaagcctgctgtcc
ttcttctctcactacgtggacagacagagactcaacctgcttcaggacaagctgcaattg
tctcccaagcccaggtag
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