Acipenser ruthenus (sterlet): 117410610
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Entry
117410610 CDS
T07327
Name
(RefSeq) TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L isoform X1
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117410610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arut03021
]
117410610
03036 Chromosome and associated proteins [BR:
arut03036
]
117410610
Transcription machinery [BR:
arut03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117410610
Coactivators
SAGA/TFTC/STAGA complex
117410610
Chromosome and associated proteins [BR:
arut03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
117410610
STAGA complex
117410610
TFTC complex
117410610
SAGA complex
117410610
SLIK complex
117410610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_TEP1_2nd
TFIID_NTD2
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_Vps41
Beta-prop_DCAF4
Beta-prop_HPS5
Beta-prop_Nup120_160
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_RFWD3
PEP5_VPS11_N
Beta-prop_IP5PC_F
eIF2A
Ge1_WD40
WD_LRWD1
Beta-prop_DCAF12
Mala_s_1-like
Motif
Other DBs
NCBI-GeneID:
117410610
NCBI-ProteinID:
XP_033873170
LinkDB
All DBs
Position
6:41099327..41107515
Genome browser
AA seq
597 aa
AA seq
DB search
MQVMKRVRTEQFQYTVAQYLKRRQYVESEGPPKGPKLSQTAEEMATNLTVQTESGCTNFV
SAAPCQADSQQYEIQFGQLRTFLTDTNVQWSREVTSVLYPLFVYLHLDMVHCGLKSSVDS
FYSRFHSMFLQDTDQKDIIEQLRTTLTVQDISSNPKLRAFLDNKYVVHLTDEAYNYLLRY
LQSDNNTALCRVLASHIQVEVTSTQRTVYQLYGSGPSGVGGFSRGDASNNMEPGDVPASI
LQNEAARNSLQECIKRVKDGPPSLTTVCFYAFHNTDQLLNSAEISANSKLLAAGFDNSCV
KLWSLRARKLKAEPHQVDVSRINLACDVLDDETDDEDSAGTEMKTLRGHCGPVYSTTFLT
DSSGLISCSEDTTIRYWNLGSFTNTALYQGHAYPVWDIDVSPCSLYFASGSHDRTARLWT
FSRTYPLRLYAGHLADVDCVKFHPNSNYIATGSTDKTVRLWSTQQGNSVRLFTGHRGPVL
SLAFSPNGKYLASAGEDQRLKLWDLASGALFKDLRGHTNNITSLSFSPDSSLIASASMDN
SVRVWDIRNTYCNASADGSSSELVGVYTGQISNVLSVQFMACNLLLTTGTTQENQEH
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atgcaggtcatgaagcgagtacgtacagagcagttccagtacacggttgctcagtacctc
aagcgtcggcagtatgtagaatcagagggtcccccaaaggggccgaaattatctcagact
gcagaggagatggcaactaacctcacagttcaaacagagtcaggttgtaccaattttgtg
tctgctgccccttgtcaggcagactcacagcagtatgaaatacagtttggacaattgcga
acttttctgactgatacaaatgtgcagtggagccgggaagtgacctcagtgctgtacccc
ctatttgtctacctccaccttgacatggtacactgtggcctaaaaagctcagtggacagc
ttttatagccgcttccatagtatgttcctgcaggacaccgaccagaaggatattatagaa
cagttgagaactacgctgacagtccaggatatctcatctaatccaaaactcagagccttc
cttgacaataagtatgttgtccacctcactgatgaggcctacaactacctcctccgctac
ctccagagtgacaataacactgctctctgtagggttctggcttcccacatccaagtggag
gttacttccacccagcggactgtctatcagttgtatggtagcggccccagcggcgtgggg
gggttttcacgaggggatgccagcaataacatggagcctggggatgtgcctgctagcatc
ctgcagaacgaagccgcccgcaactcgttgcaagagtgtatcaaacgtgtgaaggatggg
ccgccgtcacttaccactgtctgcttctatgcatttcacaacacagaccaactgctcaat
tcagctgagatctccgccaacagcaagctattggctgccggctttgacaactcgtgcgtc
aagttgtggagcctgcgggcccggaagctcaaggcagagccccaccaggtggacgtctca
agaatcaatttggcgtgtgacgtccttgatgatgagactgatgatgaagacagtgctggt
actgaaatgaaaaccctaagaggacactgtgggccggtgtacagtactacattccttacg
gacagctcagggctcatctcctgttctgaggacacaacaatcagatactggaacctcggc
agttttactaacactgctttgtaccagggacatgcatacccagtgtgggacattgacgtt
agtccgtgcagcctttattttgcaagtgggtcacatgacaggactgccaggctttggacg
tttagtcggacatacccattgaggctgtatgcgggtcacttggcagacgtagactgtgtc
aagttccatcccaactcaaattatatcgccacaggctccactgacaaaactgttcggctg
tggagtacacagcaagggaattccgtaagactgttcactggccaccgtggccctgtttta
tcactggccttttcacccaatgggaagtacctggcatcagcaggggaagaccagaggcta
aaactctgggacttggcatcaggtgcattatttaaagacttgagggggcataccaacaac
atcacaagcctctccttcagtcccgacagtagcttgattgcctcggcctcgatggacaat
tctgtcagggtttgggatatccgaaacacgtattgcaatgcatctgctgacggctcctcc
agtgagctagttggcgtttatacaggacagattagtaatgtattgagcgtgcagtttatg
gcctgcaacttgctactaacgactggaactacacaggaaaaccaagaacattag
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