Acipenser ruthenus (sterlet): 117410725
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Entry
117410725 CDS
T07327
Symbol
frem1b
Name
(RefSeq) FRAS1-related extracellular matrix protein 1b
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117410725 (frem1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
arut04091
]
117410725 (frem1b)
Lectins [BR:
arut04091
]
C-Type lectins
Lecticans
117410725 (frem1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Big_9
Lectin_C
Calx-beta
Motif
Other DBs
NCBI-GeneID:
117410725
NCBI-ProteinID:
XP_033873384
LinkDB
All DBs
Position
10:complement(20484811..20647075)
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AA seq
2215 aa
AA seq
DB search
MLNISYNILGNEHKILSTEDHLVGRLDERKEYLVLVLRGLHFYKSTNMKTAAIATIALLV
SASLIDLPLTMADGLVRLNTGVQVGRGQVVYVTNNELQFNIPKEVDSCKVEVVLNEPITQ
RVGKLGPQVFDCHFLPNEVKYTHNGSPILEEDNVMLRIYRFTESETFVETFLLNVQVKEP
EVSLIQFGVVHLEVPQFHGVSNPMDGRVVSFNTSSGTICTVRIMSSETHTPAHGQLVTEN
PSRSQKNEATAGSILHKGLRKARQARLPCPSNKACHPGVKEVRFLKANCEDFLHMGLKYQ
HLSPPSPNVDYIPIRVEIRDEKTRTQLQAENAWIPVKIWGAIQNQQPRGAFMSMFILEVD
QFILTPLSTASLDAEDDETPQSRLVFSVTKPPDEGYITHLDDHTKPVSSFSWQDLYEMKI
AYQPPNGSHRGRRNFEVEFEAIDGFFLKSPSIMVHFSIRTTETNAPRVSWNMGMDLLEGQ
SRPITWENFQIVDNDNIHAVYLVTVDGPQHGRLTVRGGKGFMFKVQDIKDGTVRYHHSDS
DTTKDYIIFRISDGRHSIRHKFPINILPKDDTPPFLINSVAFELEEGGSVQVQEFMLLAS
DFDSSDDYILYRLTSPPRAGEIVKKHSPEHSGTPVLSFLQRDLFHGLIYYHHLGAEVFED
SFDFTLSDSHDPPNLSQTHTVVIHISPVKDQLPKEVSDSVRSIVVKETEIAYITKSHLHF
RDTESADTDLMYFVTKPCFSPRSPGVYDAGKLFYTDSMSSMKKDTSVPVLKSFTQHAVNH
LKVGYMPPQMDIGPEPLFVQFVFTVTDQQGGELTGLIFNITVTPVDNQQPEIFTNQMKAE
EGSGCFITPENLLVRDVDSRKEDLRVQLKRRPQHGAIELQGLAMLEGDFFTLQDLQAFKV
RYQHDDSETLEDAVVFTATDGFNSADGVLIAQIIPLNDEPPELGAGLKSGLECPEGGKVL
ITAEYLYATDADSDDAKLTYMLGRTPTHGAVRRSGVTVDRFTQLDVIQGFISYEHTGGEI
GPSPCSDTVTLIVSDGEAGTVDSCCQDDTIPPVPLHGSLPVYDLNITVLPINNQPPSITV
GDMFVVDEGSSAGLLPDSLSASDDDTFPEGLHFLLETPPQYGYLENILPSPGYEKSNAGL
SVVSFSTQHLQHGYIHYVQSQHQGLEPTADHFMVAVSDGVHKSIARPFYVIINPTNDESP
LLHLGNLTVMEGGMRELSPSVLNAMDLDAPPDTLSFSLIAPPVHGTVLNEIYGVQRSRYK
QMGLEMLRENLPVHRFTLDQLREGMKLVYMHDDTDTLQDSFTIQLTDGKHTVQGTVYIHI
IPVNDEKPLLLKNAGLEVDVAENKVISSVLLEAEDKDTPRESLLYVITTSPAFGQLHLKM
PSGWVPLHPGMNFTQEEVDMNRLWYLHTTILGSKGHDSFRFYLTDLENQSPPQSFYISLR
NIHKGDIVLLTRPVTLTDGDRVTLTTDVLLATDGTGKAEELLYAISVPPAHGHIEYINYP
GVPIAGFSQLDVAAQKVCYLHDNSHEAMADSFSFVVSNGLTTKNGFLKFVIEHMDRIPPT
LLSNKGLQLLEGAMVTITSEVLELTDPDTVVGNLTYSITQQPRHGRLFLKGKALPMGRFT
QTDVNDLDLTYQHNGGQAEIDQFTFTASDGTNEGFLLYGQLRKEPVEFTIQVDHIDKSSP
CIVTKGRPSTVEGLKDGRFVIYITARSLKAMDQDSKDEELDFTILRPPHSGYLENAFTGE
YVKGRFTQRDLNLRSIRYVINPSIEVTGDSFEFRVSDPAGNAMLPEVMELTWSRIELAAQ
CFRVCENVGTLSIQVVRSGNSEDPSYIGIQVQEDSAKVGRDFTHSSASLIQFDPGVSTKM
WNIFLKDDGLEENNEKFKIQLSVPKNAILGQKDKASVEIIDPRGGSCDPEELRPDGNVEM
SFIPAIDRPSNGGSSVSHPEKGSSSKREEPWERYASPLRGDVPQTDHYLDYSGGVVQEEV
PRPQTRKHLQVVGSSRRVRPSGVERKNEETVWTFHGIIPLRVGEKRVAVPVQPSSFQTDL
HVPQSWSWQPSSLHLNRGGEIPQGDSPPVYISAPAILSTSVDNSSCPPGWTLHGKHCYSL
SPSYLATWERAEKDCRLMFQSHLVSVHSEKEIKWLWKFAGKLPFWIGLTDQGEPGRWVWS
NGRPVSFTKLKQGAKSSEGGAVSRCVLMQDKKRWILRSCNMRKERFVCSLPALRH
NT seq
6648 nt
NT seq
+upstream
nt +downstream
nt
atgttgaatatctcatacaacatcctgggaaatgagcataagatcttgtccactgaagac
catcttgtaggacggttggatgaaaggaaggaataccttgttttagtgttacgtggatta
cacttttacaaaagtacaaatatgaagactgctgccattgctaccattgctttactggtg
tcagcctctctaatagacctgcccctcaccatggctgatggtcttgtccggctcaacaca
ggagtccaggttggcagagggcaggtggtatacgtgacgaacaatgaacttcaattcaat
atccctaaagaagtagactcgtgcaaggtggaggttgtgctgaatgagccaataacgcag
agggtagggaagctcggccctcaggtgttcgactgccatttcttacccaatgaagtgaag
tatacccacaacggctcccctatactggaggaggacaatgtgatgctgagaatatacagg
tttacagaatcagagacctttgtggagacattcctcttgaacgtgcaggtgaaggaaccc
gaagtcagtttgatccaattcggcgtggtgcaccttgaagtcccgcagttccacggagtg
tccaatcctatggatggccgtgtggtgtctttcaacactagctcaggtaccatctgtaca
gtgaggataatgagctcagagacgcatacccctgctcacgggcaactagtgactgagaac
ccatccagatcccagaagaacgaggcaacagcaggctcaatcctgcacaaaggcttaagg
aaagccagacaagccaggctcccctgccccagcaacaaagcctgccatcctggtgtcaag
gaggtgcgcttcctcaaggcaaattgtgaagacttccttcacatgggtctgaagtaccaa
cacctcagccctccctctcccaacgtcgactacattcccattcgtgtggaaatcagagac
gagaagacacgcactcaactgcaggcggagaatgcctggattccagttaagatctggggg
gcaatccagaaccagcagccccggggagctttcatgtccatgtttatcctggaggtggac
cagttcatcctgaccccgctgagcactgcctctctggatgcagaagacgacgagacgcct
cagtccaggctggtcttcagtgtcaccaagcccccggatgagggctacattacccatctg
gatgaccacaccaagcctgtgtcttccttcagctggcaggacctctatgagatgaagatc
gcctaccagcctccgaacggcagccatagaggcaggaggaactttgaggtggagtttgaa
gctattgacggattctttttaaagagcccctccatcatggttcatttttccatccggaca
actgaaaccaatgcaccacgagtctcctggaacatggggatggatttgttagagggccag
tcgagaccgatcacatgggagaacttccagatcgtggacaatgacaacatccatgcagtc
tacctagtgacagtggatggcccacagcacgggcgactcacagtaagaggtggcaagggt
tttatgttcaaagttcaagacatcaaagatggtacggtgcgctatcaccactctgacagc
gacaccaccaaagactacatcatcttccgcatctctgacgggaggcacagcattcgccac
aagttccccatcaacatcctgcccaaagacgacacgccccccttccttatcaacagcgtg
gcgtttgagctggaggagggtggcagcgtgcaggtccaggagttcatgctgctggcctca
gacttcgactccagcgacgactacatcctctacagactcaccagcccgccgagagccgga
gagattgtcaagaaacactcaccagaacattcaggtacccctgtgctgagcttcctgcag
agagacctgtttcacggactaatctactaccaccacctgggggctgaggtcttcgaggac
tcctttgacttcaccctgtccgacagccacgatccccccaacctctcacagacccatacg
gtggtgatacacatatctcctgtgaaagaccagctgcctaaggaagtctccgatagtgtg
cgttctattgtcgtcaaggaaacggagatcgcctacatcaccaagagtcacctgcacttc
agggacactgagtctgcagacactgacctcatgtactttgtgaccaaaccctgcttctcc
ccaagatcacctggggtatatgacgctgggaaactgttctatacagacagcatgagctcc
atgaagaaggatacttctgtcccagtgcttaagtccttcactcagcatgctgtaaaccac
ttgaaggtcggctacatgcccccacagatggacatcgggcccgagcccctcttcgtgcag
tttgtctttaccgtgactgaccagcagggcggcgaactcacagggctgatcttcaacatc
accgtcacacctgtggacaaccaacaacctgagattttcaccaatcagatgaaagcagag
gagggttctgggtgcttcatcactccggagaacctgctggtgagggacgtggattccagg
aaggaggatctgagggtgcagctgaagaggagaccccagcacggggccatcgagctgcag
ggactggccatgctggagggggacttcttcacattgcaggacctacaggcgttcaaagtc
aggtaccaacatgacgactcagaaaccctcgaagatgcagtggtgttcacggctactgat
ggcttcaactctgcagatggggtgcttatagcacagatcatcccgttaaacgatgagccc
ccggagctgggcgcagggttgaagtccgggctggagtgtccagagggggggaaggtgtta
atcacagcagagtacctgtacgccacagacgcagacagcgatgatgccaagctgacctac
atgctgggccgcacaccaactcacggggcagtgaggaggagtggagtcacagtggacagg
ttcacccagctggacgtcattcaaggattcatctcttatgagcacactgggggcgagatt
gggcctagcccctgctctgacacggtcactctaattgtgtcagatggcgaggctggcact
gtggacagttgttgccaggacgacaccatcccgccagtgcccctgcacggctcacttcct
gtctatgacctgaatattactgtgctgcccatcaacaaccagcctccttccatcacagtg
ggcgacatgtttgtggtggacgagggctcctcagctggtctgctgcctgattctctgagc
gcctctgatgacgacaccttccctgaggggctgcacttcctcctggagacccccccacag
tacggctacctggagaacatcctcccctcccccggctacgagaagagcaacgccggcctc
agcgtggtctctttcagcactcagcacctccagcatggctacatccactacgtgcagtcc
cagcaccagggcctggaacctacagctgatcacttcatggttgccgttagcgatggggtc
cacaagtccatagcgaggcctttctatgtcatcatcaaccccaccaatgatgagagtccg
ctgctgcaccttgggaacctcacagtgatggagggtgggatgagggagttgagcccctca
gtcctgaatgctatggatttggacgcccctccagacaccctctctttctctctcattgct
cctcctgtccatggaactgtcctgaatgagatctatggagtccagaggagccgctacaag
cagatggggttggagatgctgcgtgagaacctgcccgtccacagattcactctggaccag
cttcgagaaggaatgaagctcgtctacatgcatgatgacacggacaccctccaggacagc
tttaccattcagctgacagatggcaaacacacagtccaggggacagtgtacatccacatc
ataccagtcaacgatgaaaagccactgctgttgaagaatgctggtctggaggtggacgtg
gcagagaacaaggtgatctccagtgtgctgctggaggctgaagacaaggacactcccaga
gagagcctcctctatgtaattaccaccagcccagcattcggacagctccatttaaagatg
ccctcaggctgggtgcccctgcacccgggtatgaacttcacccaggaggaggtggatatg
aaccggctgtggtacctacacaccaccatcctgggctccaagggccacgacagcttccgc
ttctacctgacagacctggagaaccagtcccccccccagagcttctacatctccctgcgc
aacatccacaaaggtgacattgttcttctcaccagacctgtaactctaaccgatggtgac
agggtgaccttgacaacagatgttctcctggcaacagatggcactggcaaggctgaggag
ctgctgtacgccatctcagtgccacctgcgcatggtcacatcgagtacatcaattatccc
ggcgtgcccatcgcaggcttcagccagttggatgtggcggcccagaaagtgtgctacttg
cacgacaacagccacgaggcaatggcagactctttcagctttgtggttagcaacggactg
acaaccaaaaacgggtttctgaagtttgtcattgagcacatggaccgtatcccacccacg
ttgcttagcaacaagggcctgcagctgctggaaggcgccatggtgaccattacttcagag
gttctagaactcacagaccctgacactgtggtgggcaacctgacctattccattacccag
cagccccggcatgggaggctctttctgaaggggaaggccctgcccatgggccgcttcacc
cagacagacgtgaacgacttggacctgacctaccaacacaatggaggccaggcggaaatt
gaccagttcaccttcactgcgtctgacgggaccaacgaagggtttctgctgtacggacaa
ctaagaaaggagcctgtagagtttactatacaggtggatcacattgacaagtcctccccc
tgcattgttaccaaggggagacctagcacagtggagggcctgaaggatggcaggtttgtg
atctacatcacagcacgctctctcaaagccatggaccaggacagcaaagacgaggagctg
gacttcacaatcctgagaccgccccattccgggtacctggagaatgccttcacaggggaa
tacgtcaagggccgctttacccagagggacttgaatctgcgttctatccgctatgtcatc
aacccatcgatcgaggtcactggagacagctttgagttcagagtctcagaccctgcgggc
aatgccatgctaccagaagtgatggagttgacgtggtccaggattgaactggcagctcag
tgtttccgtgtttgtgagaacgtgggtaccctctccattcaagtggtccggagtgggaac
agtgaagatccctcatacataggcattcaggttcaggaagattctgctaaagtgggcagg
gacttcactcacagctcagccagcttgattcagtttgatccaggtgtttcaacaaagatg
tggaacatatttctgaaggatgacggtttggaagagaacaatgaaaagtttaagatacaa
ctaagtgtcccaaaaaatgcaattttgggtcagaaggacaaagccagtgtggagatcata
gaccccagaggaggtagctgtgaccctgaggagctacgtccagatggcaatgttgagatg
tcttttatcccagcgattgacaggccctcgaacggtgggagctcagtctctcatccagag
aaggggtccagctcgaagagggaggagccgtgggagcgctatgcttctccgctcaggggg
gacgtcccccagactgaccactatctggactacagcgggggcgtggtccaagaggaggtt
cccagaccgcagacgaggaaacatctccaagtagtcggcagcagcagaagggttcgtcct
tcgggggttgaaaggaaaaatgaagagacagtatggaccttccacgggattattccactg
agagtgggagagaagagagtggcagtcccagtgcagcccagctccttccagacagacctg
cacgtcccacaaagctggtcctggcagccctcctctctccatctcaacaggggaggagaa
attccacagggggactcgccacctgtgtacataagcgcaccagcaatcttgagcacaagt
gttgataactcaagctgcccacctggctggacgctccatgggaagcactgctacagcctg
agcccttcatatttagccacctgggagagagccgagaaggactgcagactaatgttccaa
agccacctcgtcagtgttcattccgaaaaagaaatcaagtggctgtggaagtttgctgga
aaactgccattctggatcggactgacagaccagggtgagcctgggaggtgggtgtggagc
aacggtagacctgtatcatttacaaaactgaagcagggggcgaagtcatctgaagggggc
gctgtctccaggtgtgtcctgatgcaggataagaagagatggatcttaagaagctgcaat
atgaggaaggagagatttgtctgttcactcccagcactgagacactag
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integrated database retrieval system
