Acipenser ruthenus (sterlet): 117411097
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Entry
117411097 CDS
T07327
Name
(RefSeq) LOW QUALITY PROTEIN: HBS1-like protein
KO
K14416
elongation factor 1 alpha-like protein
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117411097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117411097
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117411097
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
Aq_aa27
GTP_EFTU_D4
GUCT
Motif
Other DBs
NCBI-GeneID:
117411097
NCBI-ProteinID:
XP_033874088
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All DBs
Position
6
Genome browser
AA seq
688 aa
AA seq
DB search
MSRHRNVRGYNYDEDLDDDDIYGQSVDDDYCISPATAAEFIYSKRDKPSVFTEPLEEEKF
EVEEQAVPPSSPSTNHEKLSEVDQAQLFSCLDQMREVLGDSVPDPVLVEAVLKCRFDLQK
ALDLMLSEEGKKTPSARNHNEVSTGKAAKGRARDPTVTKIDSEIVPKVARMTVSGKKQTM
GFDVPSTEENGVLGSTSRRGQVPEEIPPPALPDAPSKVAFSPPSSQNLSEESPAVPTPVR
MSSKAKQQINIKAELEKRQGGKLLLNLVVIGHVDAGKSTLMGHLLYLLGNVNKRTMHKYE
QESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETKTKVITLMDAPGHKDFIPNMI
TGAAQADVAVLVVDASRGEFEAGFDAGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQD
RFKEISSKLGQFLKQAGFKETDVSYIPTSGLSGENLTTKSKEPELTAWYKGPCLLEQIDA
FKSPQRPVDKPFRLCVSDVFKDQGSGFCVTGKIEAGYVQTGDRILAMPPNETCTIKAITL
HDEPIDWAAAGDHVSLTVTGMDIIKINVGCVFCDPKEPIKACTRFRARILLFNIEVPITQ
GFPVLLHYQTVSEPATIRKLVSVLHKSSGEVLKKKPKCLTKGQNALVELQTQRPVSLELY
KDFKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgacacagaaatgtccggggttataactacgatgaagatttggacgacgacgat
atatatgggcagtctgttgatgatgactactgcatttcaccggctacagctgccgagttc
atctattccaagcgtgataagccctcagtcttcacagagccccttgaagaagagaagttt
gaggttgaggagcaggctgtacccccttcttcccccagcacgaaccatgaaaaacttagt
gaagtagatcaagctcagttgttttcatgccttgatcagatgcgagaggtcctcggtgac
tctgtcccagatcctgttctggtggaagcggttcttaagtgccggtttgatttacaaaag
gccctggacctcatgttatctgaggaaggcaagaagacaccaagtgcaagaaaccacaat
gaggtctctacagggaaagctgccaaaggaagagcaagagatccaacggtgactaaaatt
gactcagaaatcgtgcctaaagttgccagaatgactgtgtctggaaaaaagcagacaatg
ggatttgatgttccaagtaccgaagagaatggggtactgggtagcacttcccgcaggggt
caagttcctgaagaaattcccccaccagcactcccagatgctccgtccaaagttgcattt
tcacctccctccagccagaacctctccgaggagtctccagctgtgccaacccctgtcaga
atgtccagcaaagccaagcagcagatcaacatcaaagcagaactggagaaaagacaagga
ggaaagcttctgctgaaccttgttgttataggtcatgtagatgcaggtaaaagcacatta
atgggccatcttctttacttgctgggtaatgttaacaaaaggacaatgcacaagtatgaa
caagaatccaagaaggctggaaaggcttcctttgcatatgcctgggtactggatgagact
ggggaagaaagagacaggggtgtgaccatggatgttggaatgaccaagtttgagacaaag
acaaaagtgatcacattaatggatgcacctggtcataaagactttatacccaacatgatc
actggagctgctcaggctgatgtggcagtacttgtggtcgatgccagccgcggagagttc
gaagcaggttttgacgcaggcgggcagacgagggagcatgggctgctggttcggtctctt
ggcgtcacccagctggcagtcgctgtcaacaaaatggatcaggtgaactggcaacaggac
aggtttaaggaaatttcctctaaacttggacagttcttgaaacaagctggtttcaaggag
actgatgtgtcctatatccccactagtgggctctctggtgaaaacttgaccactaagagt
aaagaacccgagctcaccgcttggtataaaggaccttgtcttctggaacagattgatgcc
tttaagtcaccacaaagaccagtggataaaccttttagactgtgtgtctctgatgttttt
aaagatcaaggatcaggattctgtgtgactggaaagatagaagcaggttatgtacagaca
ggggaccggatattagcaatgcccccgaatgaaacctgtactattaaagctatcacgttg
catgacgagccaatcgactgggcagcagccggagatcacgttagtctcacagtgactggc
atggatatcatcaaaatcaatgttgggtgtgtgttttgtgatccaaaggaacctattaaa
gcgtgtacacgatttcgggcgaggatcctcctgttcaatattgaagttccaataacacaa
ggatttcctgtgctgttgcattaccaaactgtcagcgaacctgccactattagaaaatta
gtaagtgttctgcacaaaagtagcggagaagtgctgaagaagaagccaaagtgcttgact
aaaggtcagaatgcattggtggaactacagacccagagaccagtttctctcgaactctac
aaagactttaaagagctaggacgcttcatgctgcggtatgtcggatccactatagctgca
ggcgttgtcacagagatcaaagaatga
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