Acipenser ruthenus (sterlet): 117411163
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Entry
117411163 CDS
T07327
Symbol
aplf
Name
(RefSeq) aprataxin and PNK-like factor isoform X1
KO
K13295
aprataxin and PNK-like factor [EC:3.1.-.-]
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
arut03400
]
117411163 (aplf)
DNA repair and recombination proteins [BR:
arut03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
117411163 (aplf)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
117411163 (aplf)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCHH
Motif
Other DBs
NCBI-GeneID:
117411163
NCBI-ProteinID:
XP_034777557
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All DBs
Position
6:complement(51264100..51340543)
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AA seq
508 aa
AA seq
DB search
MSAFQLEPVDGGSLISLTDGETVVGRGPLLGTHLNPCFYQSSTEDTPRPLEKDKWHPLYP
GNLFSLLPDKYIFRVISTDSKNNNTQRNSQALDEETFAEPHLASARGEKRSAKQSLSSAE
ESLVALKSLAKKEGSDTQENSPFGKHVSLAGAVHVPNVTKPTQKKRVLPAWMLKGASETP
GPSTSGDGGKRGCKIKQGLSNPSGTPSKRLPSSKSTDNSEAEVSSVKKRRKMSDENKQAE
SKAASSSAATNKEETADEEQLGASVHKAIWKLSDDESGDSPTIQAKPPAEFNDWEMSGNE
EEEAPSQRRKTQQDSPVQSETSCRETEKLNERQSPETKASGSSGSKDTTQANAGKSQKRN
PCMYGKGCYRKNPMHFQEFSHPGDSDYQEDKASDEDESDNRPECPYGTDCYRKNPQHREE
YKHTLPPETGERRSKRKHDLKGKSVLADDSDEDGQSNEYDLEDSFINDEEDFDHTDEDSD
YEPESDDSAKEDITELKKEAKQFVNRRK
NT seq
1527 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcttttcagctggagcccgttgacggaggcagtttaatatctctgacagacggg
gaaacagttgttggtcgaggtcctttacttggaacccatttaaatccatgcttctatcag
tcctcaactgaagacacccctcggcctttggagaaagataagtggcatcctctataccca
ggaaaccttttttctttgcttccagacaaatacatattcagggtcatctcaactgacagc
aaaaacaataacactcaaagaaacagccaggccctggatgaagaaacttttgcagaacct
catctcgcatctgcaagaggagagaagcggtcagctaagcagtctttgagcagtgcggaa
gaatctttggttgctttgaagagcttggcgaaaaaagaaggcagtgacacacaagagaac
tcacctttcggcaaacatgtaagccttgcgggagcagttcatgttccaaatgtaaccaaa
cctacacagaagaagcgagtgcttccggcatggatgttgaaaggagcatcagaaacccca
gggccatccacatcaggagatggggggaaaagaggatgcaaaattaaacaagggctgtca
aatcccagtggaactccaagcaaaagattgccttcttcaaagagcacagataactctgaa
gcagaggtgtcatcagtgaaaaagaggaggaagatgagtgatgaaaacaagcaagcagaa
tcgaaggctgcctcttcttcagctgctaccaataaggaggagacagcagatgaggaacag
cttggtgcttcagtgcacaaggccatctggaagctcagtgatgatgagtctggagacagc
cctacgatccaggccaagccgcctgctgaatttaatgactgggaaatgagtggtaatgag
gaggaggaagccccttcccagagacgaaagacacagcaggacagccctgtgcaatcagaa
acttcctgcagggagacagagaaactcaatgaaaggcagagtccagagaccaaagcctcg
ggttcgtccgggagcaaagacacaacacaggctaatgcaggaaaaagccagaaaagaaac
ccatgtatgtacggcaagggctgctacagaaaaaaccctatgcattttcaagaattcagt
catcctggtgactctgattatcaagaagataaggcgagtgatgaggatgagagtgataac
aggccagaatgtccatacgggactgattgttacaggaaaaatccacaacacagggaggag
tacaagcacactttgcctccagagactggcgagcgtagatcaaagcggaagcatgaccta
aaaggtaagagtgttttggctgatgacagtgatgaggatggacaatctaatgagtatgac
ctggaggacagtttcataaatgatgaagaggattttgatcacactgatgaagattccgac
tatgaaccggagtctgatgatagcgccaaggaagacattacagagttaaagaaggaagca
aagcaatttgtcaacagaagaaaataa
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