Acipenser ruthenus (sterlet): 117411394
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Entry
117411394 CDS
T07327
Name
(RefSeq) embryonic polyadenylate-binding protein A-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03015
mRNA surveillance pathway
arut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117411394
09123 Folding, sorting and degradation
03018 RNA degradation
117411394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117411394
03041 Spliceosome [BR:
arut03041
]
117411394
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117411394
mRNA cycle factors
Stress granule specific factors
117411394
Spliceosome [BR:
arut03041
]
Complex C
Other components
Complex C specific factors
117411394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RRM_5
RRM_10
RRM_3
HTH_58
APS_kinase
Motif
Other DBs
NCBI-GeneID:
117411394
NCBI-ProteinID:
XP_033874789
LinkDB
All DBs
Position
28:523902..534852
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AA seq
655 aa
AA seq
DB search
MNSSGPGYPLASLYVGDLHADVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAANRAIETMNGMLLNDRKVLETGRELVSGLV
DQVSCSMGKNCEMTILSFVGHFKSRREREAEFGAKAMEFTNVYIKNFGEDVNDEKLREVF
SQYGRTLSVRVMVDEMGRSRGFGFVNYENHEEAQKAVEGMNGKELNGRIIYVGRAQKRLE
RQGELKRKFDQIKQERIHRYQGVNLYVKNLDDGIDDERLRKEFAPYGTITSAKVMTDIGH
SKGFGFVCFSSPEEATKAVTEMNGRIISAKPLYVALAQRKEERKAILTNQYMQRLASVRA
MPGPVAGSYQSSGYFMSAVPQPQNRTFYAPNTVTPLRPAPRWTSQPPRPQAAYQTAPPFL
RSAVPRRPSTPISTMRQASTQEPRVMSNMQRMANIGTQTAGGRTATPGPMVRGVNQYKYS
TGVRNVQPVFAMPQPLAVQQVMESAVHMRGQEPLTASMLASAPLQEQKQMLGERLYPLIH
AMHPALAGKITGMLLEIDNSELLHMLESPESLHTKVEEAVAVLQAHQAKDISPKK
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgaacagcagtggccccgggtaccccctcgcctctctgtacgttggagacctgcacgct
gatgtcacagaagccatgctgtaccagaagttctctccagctggaccaatcatgtcgatc
cgagtttgtcgtgacatcattacccgaagatccctgggatacgcctacatcaacttccag
cagccagcggatgctgaatgcgctttggacacgatgaattatgaagtcattaaaggcagg
ccgatccgaataatgtggtcgcagcgtgatccgggtctgcggaagtctggagttgggaat
atattcattaagaatatggatgaatccatcgacaacaaggctctgtatgatacattctct
gcctttgggaatatcttgtcctgcaaggtagtgtgtgatgaaaatggatcgaaagggtat
ggttttgttcattttgaaacgcacgaagcagcgaacagagccattgaaactatgaatgga
atgctgctcaatgatcgtaaagtcctagagacaggtagagaattggtgtctggcctagta
gaccaagtttcctgttcaatggggaaaaattgtgagatgaccatacttagtttcgtgggt
cattttaaatccagacgggagcgggaggctgaattcggtgcgaaagccatggaattcacc
aacgtgtacatcaagaactttggggaggacgtgaacgatgagaagctgagagaagtgttt
tctcaatacggaaggaccttgagtgtgagggtgatggtggatgagatgggtcgttccagg
gggttcgggtttgttaattatgagaatcatgaggaagcacagaaggctgtggaggggatg
aatggaaaggaattgaacgggcggatcatttatgtgggccgagctcagaagaggctggag
cgtcagggtgagctgaagcgcaagtttgatcagatcaagcaggagaggattcatcgatac
cagggtgttaacctctacgtgaagaatcttgatgacggaatagatgacgaaagactgagg
aaagagtttgcaccctatggtactatcacgagtgcaaaggtgatgacagacatagggcac
agtaaagggtttggattcgtctgcttttcctctcccgaggaggcgacgaaggccgtcacg
gaaatgaacggacgcatcatcagcgccaagccgctctacgtggccttggcccagcgaaag
gaggaacggaaagcaatcctgaccaaccagtacatgcagagactggccagcgtccgagca
atgcccgggccggtcgctgggtcctaccagtcttcagggtacttcatgtctgctgttcct
cagccccagaacaggactttctacgctccgaatacagtcactccactcagaccagctcct
cgctggacctcgcagcctcccagacctcaagcagcttatcaaacagctcctccgttctta
aggtctgcagttcctaggcgcccttccaccccaatcagcacaatgaggcaggcatccacc
caggaaccccgtgtgatgagcaacatgcagagaatggctaatataggtacccagacagcc
ggaggacgcactgcaacgcctggcccaatggtccgaggtgtgaaccagtacaagtattcc
actggagtcaggaatgtgcagccagtcttcgccatgcctcagccgcttgctgtgcagcag
gtaatggagtcagctgttcacatgcgaggacaggagcccctcactgcgtccatgctggcc
tcggcacccctgcaggagcagaagcagatgctgggggagcgcctctaccctctgatccat
gcaatgcacccggccctggctggtaaaatcacagggatgctgctggagatcgataactca
gagctgctgcacatgctagagtctcctgagtctctgcacaccaaggtggaggaggcagtg
gctgtactccaggcacaccaggctaaagacatctccccgaagaaataa
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