Acipenser ruthenus (sterlet): 117411416
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Entry
117411416 CDS
T07327
Name
(RefSeq) LOW QUALITY PROTEIN: putative ATP-dependent RNA helicase DHX57
KO
K13026
ATP-dependent RNA helicase DHX57 [EC:
5.6.2.6
]
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
arut03012
]
117411416
Enzymes [BR:
arut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117411416
Translation factors [BR:
arut03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117411416
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
RWD
HA2_C
DEAD
zf-CCCH_4
HA2_N
zf-CCCH
AAA_22
AAA_19
Torus
NPHP3_N
nSTAND3
NB-ARC
ATPase_2
zf-CCCH_2
AAA_14
T2SSE
Viral_helicase1
AAA_34
UBA
Motif
Other DBs
NCBI-GeneID:
117411416
NCBI-ProteinID:
XP_034777692
LinkDB
All DBs
Position
6:complement(15092429..15114829)
Genome browser
AA seq
1409 aa
AA seq
DB search
MSVRRKAKPNRGGGRFNKPRGGGGGGRGKSGGGGGGGARKAADNSWDDGDDFSLFDGPSR
PPRLGGGGGGGGGRGRGRGRGAGGGSSRGRPKTETGDRPRPRPEENGRPRPKTELPRMPM
QKIHMTSENQASVKELLRELQTQDFEEPEENCEEYSGSEPEEEEYDELDYRDDGQFWCTN
DDPVEVSDSAVFEPDSEEEREVCEIPISYVAIGKLSRYGFDKERSKLALQSCNRDVGVSL
EYLLQQCFKEKYGKRARSIATCRDITMEDCLVQRQEEAFALSSIYGDRFSERIHNRVWTV
TVALEFLIEKGKNHKQGSANKETSQVLLKDVCRFYLKGAGCRFGTKCRFKHQMPTEPCPN
TKKPMGLSQSSFESNTPPVYELEIRFPEGNRYPFQAPVVAFTTTDETLLLPGRLHISEYL
YGEALVAAESGEPVVFTLITCLEDEAKMSELLANNHHKYSVPPPPLPAVAPAKSKSVKRA
SPVQDVPKQLEVKKAVESEEEEEEDLEDPPAVPVENESYVNFKKKFTKKYEWKAESVLQE
NAKLCRQFRNKQSSRRFLSMLQERQKLPAWQEKKNILEMLSRSQVLVVSGMTGCGKTTQI
PQFILDDTLKGPAGKVANIICTQPRRISAISVAERVAQERAERLGTTVGYQIRLETVKSS
ATRLLYCTAGVLLRRLEGDTDLRGVTHVIVDEVHERTEESDFLLLVLKDIMIQRSDLRII
LMSATLNAELFSQYFYNCPTINIPGRTFPVDQFFLEDALAKTRYVIEDGSPYMRSGKQGN
QTSKGKSNRNAVEQLEDDMWSFMHFQKDEFVKDSIPDQQLTIQQMTVRYKGVSKSVLKTM
AAMDLDKINMDLVEAVLEWIVDGDHNYPPGAVLVFMPGLAEIKMLYEQLQSNRLFNGRRN
TRCAIYPLHSSLSSEEQQAVFNRPPEGVTKIIISTNIAETSVTIDDVVYVIDSGKMKEKR
YDASKSMESLEDSWVSRANALQRRGRAGRVASGVCFHLFTSHCFRHQLTEQQLPEIQRVP
LEQLCLRIKILDMFADQPLESVFSSLIEPPAANSVEAAKQRLRDLGALTPDEKLTPLGYH
LASLPVDVRIGKLMLFGAIFRCLDPALTIAASLAFKSPFVSPWDKREEANIKKLEFALGN
SDHLALLQAYKGWKSAAKQGSQAGFRYCREHFLSGRVLQEIASLKRQFAELLSDIGFVKD
GLKARVIERMSSKGEDGILEATGHEANSNADNIKLMSAMLCAALYPNVVQVRAPQGKYQL
TSKGAVKMQPKADELKFMTKNDGSVHVHPSSVNYPVRHFDSPYLVYHEKVKTSRVFIRDC
SMVSVYPLVLFGGGQVKVDLQRGEFVISLDDGWICFAAASHQVAELVKELRWELDQLLED
KIKNPTMDLCSCPRGSRIIDMIVKLVTTQ
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgagaagaaaagcgaagccgaaccgaggcgggggacggttcaacaaacctcga
gggggaggaggaggaggaagaggaaaaagcggaggcggaggcggaggcggagccaggaag
gctgcagacaactcctgggatgatggagatgatttcagcctgtttgacggaccgagtcgg
ccacccagactgggaggtggaggtggaggtggaggtggaagaggcagaggcagaggcaga
ggtgcgggaggtggcagtagcagagggaggcctaaaacagagactggagacaggccaagg
cccagacctgaagagaacggcaggcctcggccaaaaacggaacttccacgaatgccgatg
cagaagatacacatgacctctgagaatcaggccagcgttaaagaacttctgcgggaactg
cagactcaagattttgaagaacctgaggaaaactgtgaagagtactctggttctgaaccc
gaagaggaggagtacgatgagcttgattaccgtgatgatggtcagttctggtgtactaac
gatgacccggtagaagtctctgatagcgcagtgtttgagcccgattcagaggaggaacga
gaggtttgtgagatcccgatctcgtatgttgccattggaaagcttagcagatatggtttt
gataaggaacgtagcaaattggcattacaatcttgtaacagagacgttggagtttctttg
gagtatttgcttcagcaatgctttaaagaaaagtatggaaagcgtgccaggtctatagcc
acatgtcgtgacattaccatggaggactgcctggtgcagcggcaggaggaagcttttgcc
ctctcttccatatatggggacaggttttcagagaggatccataatagggtctggacagtc
acggtggcactggagtttttaattgagaaaggcaaaaatcacaaacagggaagcgccaac
aaggaaaccagccaggtcttgttaaaagatgtgtgccggttttacctgaagggggcaggg
tgccggtttgggacgaaatgtcgatttaaacatcagatgcctacagaaccctgcccaaat
acaaagaaacctatgggactaagtcaatccagctttgaaagcaacacgcctcctgtgtat
gagcttgagatccgtttccctgagggcaatcggtaccctttccaagctcctgtagtggca
tttactactactgatgagacattgctacttccgggtcgtttacacatttctgaatacctc
tacggggaggctctggttgctgcagagtcaggtgagcctgtcgtgttcaccttgatcacc
tgtttggaagacgaagccaaaatgagtgaattactagcgaacaaccaccacaagtacagc
gtccccccaccgccgctgcctgccgttgctccagctaaaagtaaaagtgttaaaagagct
tctcctgtccaggatgtccccaagcagctggaagtgaagaaagctgtggagtctgaagag
gaggaggaggaggacctggaggatcccccagcagtccctgtggagaacgagagctatgtg
aacttcaagaaaaagttcaccaagaagtacgaatggaaagcagagagtgtgctgcaggaa
aacgcaaagctttgtagacagttcaggaacaagcagtcgtccaggcgctttctctcgatg
ttgcaggaaaggcagaagcttcctgcatggcaagaaaaaaaaaacatcttagaaatgctg
agtcgaagccaggtgttggttgtgagtggaatgactgggtgtggtaaaaccacgcagatc
ccacagttcatcttggatgacactctgaaggggcctgcaggcaaggttgcgaacatcatc
tgcacacagccgcgcaggatctctgccatctctgtagctgaacgagtggcccaggagaga
gcagagagactggggacgactgtggggtatcagatcagactcgagactgtgaagtcttcc
gccaccaggttgctgtactgcactgctggagtgttgctgaggagactagagggagacaca
gacctgcgaggtgttactcatgttattgtggatgaggtccacgaaagaacagaagaaagt
gatttcttattattggtcctgaaagacataatgatccagaggtctgacctgcgcattata
ctcatgagtgccacacttaacgctgaactcttttctcagtacttttataactgccccact
attaatataccaggtcgtacattcccagttgatcagtttttcctggaagatgcccttgca
aaaaccagatatgttatagaagatggaagcccgtatatgcggtctggaaagcaaggcaac
cagacaagcaaagggaagagtaaccggaatgcagtggagcaattggaggatgacatgtgg
tcatttatgcactttcagaaagatgagtttgtcaaagactcgattccagatcaacagcta
acaatccagcaaatgacagtacgatataaaggggtaagcaagtccgttcttaagacaatg
gcagccatggatctagacaaaatcaacatggacttagttgaggctgtgttggagtggata
gtcgatggggatcacaactatccaccaggtgctgttctggtatttatgcctggtttagca
gaaattaagatgctgtatgaacaactgcagtccaatcgtctgtttaatggcaggcgtaat
acaaggtgtgccatttacccgctgcactcatcgctgtccagcgaggaacaacaagctgtg
ttcaatcgaccaccagagggtgtgacaaaaatcatcatttccacaaacattgctgaaaca
tcagtcaccattgatgacgtggtgtacgtcattgattcagggaagatgaaagagaagagg
tacgatgccagcaagagcatggagagcttggaggactcctgggtgtcacgagccaatgct
ttacagaggagagggagagccgggcgagttgcctctggagtttgctttcatctcttcacc
agtcactgtttccgtcaccagctcacagagcagcagctgccagagattcaaagggtgcca
ttggagcagctgtgcctcaggatcaaaattttagacatgtttgccgaccaacctttagag
tcagttttctccagtctgatcgagcctccagcagctaacagtgtggaagctgctaaacag
agactgcgagacttgggagccctgacgccagatgagaagctgactcctctgggctatcac
ctggcctcgctgcctgtggatgtccggattgggaaactgatgctcttcggtgccatcttc
cgctgcctagacccagctttgaccatcgcagccagcttagccttcaaatcgccattcgtc
tctccgtgggataagcgagaggaggccaatatcaaaaagctggagtttgccttaggcaac
agtgaccatctggctcttctgcaggcatacaagggatggaaatctgctgctaaacagggt
tcccaagcaggtttcagatactgcagggaacacttcttgtctggacgagttctacaggaa
attgccagtctaaaaagacagtttgcagagctgctgtcagatattgggtttgtgaaagat
gggcttaaagccagggtcattgaaaggatgagtagcaaaggggaagatggtatattggaa
gctacgggtcacgaggctaactctaatgctgacaacatcaagctcatgtcagccatgctt
tgtgctgccctctacccaaatgtggttcaggtaagggctccgcaaggtaaataccagcta
accagcaaaggagcagtgaaaatgcagcccaaagcagacgaactgaaattcatgacgaag
aacgatggcagtgttcatgttcacccctcttctgtgaactatccggtcagacactttgac
agtccttacctggtgtaccacgagaaggtgaagaccagccgggtttttatccgagactgc
agcatggtgtctgtgtacccactggtcctgtttggaggcggacaggtgaaagtagacttg
cagagaggggagtttgtcatctccctcgatgacggctggatctgctttgcagctgcttca
catcaggttgcagaactggtaaaagagcttcgctgggaactagatcagcttttagaagat
aaaatcaagaatcctacaatggacttatgcagttgccccagagggtctaggattattgac
atgattgttaaacttgttactacacagtag
DBGET
integrated database retrieval system
