KEGG   Acipenser ruthenus (sterlet): 117412982
Entry
117412982         CDS       T07327                                 
Name
(RefSeq) probable histone deacetylase 1-B
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
arut  Acipenser ruthenus (sterlet)
Pathway
arut03082  ATP-dependent chromatin remodeling
arut03083  Polycomb repressive complex
arut04110  Cell cycle
arut04330  Notch signaling pathway
arut04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:arut00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    117412982
   03083 Polycomb repressive complex
    117412982
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    117412982
   04350 TGF-beta signaling pathway
    117412982
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    117412982
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:arut03036]
    117412982
Enzymes [BR:arut01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     117412982
Chromosome and associated proteins [BR:arut03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     117412982
   HDAC complexes
    Sin3A-HDAC complex
     117412982
    BRAF-HDAC complex
     117412982
    REST complex
     117412982
    SHIP complex
     117412982
    MiDAC complex
     117412982
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     117412982
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    117412982
  Chromatin remodeling factors
   NuRD complex
    117412982
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 117412982
NCBI-ProteinID: XP_033877550
LinkDB
Position
29:14549773..14556891
AA seq 481 aa
MALTSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
NAEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVA
AAVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAVLELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMSKVMEMYQPSAILLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAIQGDSGEEDEEDPDKRISIRAHDKRIACDEE
FSDSEDEGEGGRRNVANYKKAKRVKTEEEKDGEEKKDVKEEEKAKEEKTEAKVAKEEAKS
S
NT seq 1446 nt   +upstreamnt  +downstreamnt
atggcgctgacttctcaaggaacaaagaagaaagtttgttattattatgatggggacgtt
gggaattactactatggacaagggcatccaatgaagccccacagaattcgtatgacccac
aacctgctgctcaactatggactgtatagaaagatggaaatttatcggccacacaaggca
aacgcagaggaaatgacaaagtaccacagcgatgactatataaagttcctgaggtctatc
cgacctgacaacatgtccgagtacagcaagcagatgcagagatttaatgtaggagaagat
tgtcctgtatttgatggtctgtttgaattctgccagctgtccactggtggatcagtagcc
gcagcagtaaagctaaacaaacagcagaccgacattgctgtcaactgggctggaggtctg
catcacgccaagaaatctgaagcctctggattttgctacgttaatgacattgttttagcc
gtccttgagctgttgaaataccatcagagagtcttgtacattgacattgatatccaccat
ggagacggcgtagaagaagctttctatacaacagaccgtgtcatgactgtatcgttccat
aagtatggagagtacttcccaggaaccggagacctcagagatattggagcaggcaagggc
aagtactatgctgtgaactacccactcagggacggaatagatgacgaatcctatgaagcc
atattcaaaccaatcatgtctaaggtgatggagatgtaccagcctagtgccattctgcta
caatgtggcgctgactcgctatccggagacagactgggctgcttcaacttgaccatcaaa
gggcatgccaagtgtgtggaatacatgaagagctttaacctgcccttgctgatgctggga
ggaggaggctacactattcgcaatgtggccaggtgttggacatatgaaaccgctgtagct
ctggacactgaaattccaaacgagctgccatataatgactacttcgaatactttggtcct
gattttaaactccacatcagcccttcaaacatgacaaaccaaaatactaatgattatctg
gagaagatcaagcagcgtctgtttgagaacctgcgcatgctgcctcatgcccctggggta
cagatgcaggccatcccagaagacgccattcagggggacagcggggaggaggacgaggag
gacccagacaagcgcatctccattcgtgcccatgataagaggatagcctgtgatgaagag
ttctctgactccgaggatgaaggggaaggaggacgcaggaatgttgctaattacaagaag
gccaagcgtgtcaagactgaggaggagaaggacggcgaggagaaaaaagatgtaaaagag
gaggaaaaggcaaaagaagagaaaacagaagcaaaggtggcaaaagaagaggcaaagtcg
tcctag

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