Acipenser ruthenus (sterlet): 117414977
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Entry
117414977 CDS
T07327
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
arut03016
]
117414977
Enzymes [BR:
arut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
117414977
Transfer RNA biogenesis [BR:
arut03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117414977
Prokaryotic type
tRNA splicing ligases
117414977
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
117414977
NCBI-ProteinID:
XP_033880756
LinkDB
All DBs
Position
7:32186180..32199112
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKISKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDNPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPSKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIYS
QEGQDYLKGMAAAGNYAWVNRTSMTFLTRQAFAKVFTTTPDDLDMHVIYDVSHNIAKVEE
HVVDGKQRTLLIHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRAMSRSKSRRNLDFQDVLDSLADQGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagctacaatgacgagctgcaatacctggataaaatcagtaaaaactgctgg
cgcataaaaaaagggtttgtcccgaacatgcaggtggaaggggttttctatgtgaacgac
ccactggagaagctgatgtttgaagagctcaggaacgcctgtcgagggggagggtttggt
ggctttcttcctgctatgaaacagattggcaatgtggctgcattacctggaattgttcat
aggtccattggtctgccggatgtgcactctggttacgggtttgctattggaaacatggct
gcctttgacatggacaaccctgatgctgtggtctcaccaggtggggtggggttcgatatt
aactgtggagtccgactgctgcgcacaaacctggatgaaggtgatgtccagcccgtcaag
gaacagctcgctcagtccatgttcgaccacattcccgtgggagtgggatccaagggcgtc
atccccatgggagccaaggatctggaggaagctctggagatgggggtggactggtccctg
cgggagggctatgcctgggcagaggataaggagcactgcgaggagtacggcaggatgctg
caggccgaccccagcaaggtctcctccaaggccaagaagagggggctcccgcagctgggg
acccttggcgctgggaatcactatgctgagatccaggtggtggatgagatttacaatgac
tatgctgccaagaagatgggcatcgatcacaagggccaggtgtgcgtcatgatccacagc
ggcagcagggggctcgggcaccaggtggccacagatgccctggttgcgatggagaaggca
atgaagagagacaagatcatagtgaacgaccggcagctggcctgtgcccggatctactct
caggaggggcaggactacctgaagggcatggctgcagccgggaactacgcctgggtcaac
cgcacctccatgaccttcctaaccagacaagccttcgccaaagtgttcaccacgacccct
gatgacctggacatgcatgtgatctacgacgtgtcccacaacatcgccaaggtggaggag
cacgtggtcgacgggaagcagcgcactcttctgatccacaggaaggggtccacgagggcc
ttccccccacaccaccccctcatcgccgtcgactaccagctgaccgggcagcctgtcctg
attggaggcaccatggggacgtgcagctacgttctgaccggtaccgagcagggcatgacc
gagacctttggaaccacctgccacggagctgggcgagcgatgtcccgttcaaaatcgcga
cgtaacctggatttccaggatgttttggacagtcttgcagaccagggtattgcgatccgt
gtcgcctcccccaaactggttatggaagaggctccggaatcctacaaaaatgtaaccgat
gttgtgaacacttgccatgacgcagggatcagcaaaaaagcaatcaaactgcggcctatt
gcagtcatcaagggttga
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