Acipenser ruthenus (sterlet): 117415256
Help
Entry
117415256 CDS
T07327
Name
(RefSeq) protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
arut03009
]
117415256
Ribosome biogenesis [BR:
arut03009
]
Eukaryotic type
90S particles
Other 90S particles
117415256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
Spt6_S1
HAT_PRP39_N
TPR_14
Suf
HAT_PRP39_C
OB_RRP5_4th
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
OB_RRP5
TPR_19
TPR_12
ARM_TT21_5th
ARM_TT21_N
TPR_15
TPR_CcmH_CycH
ARM_TT21
TPR_16
TPR_7
NRDE-2
Dna2_Rift
Motif
Other DBs
NCBI-GeneID:
117415256
NCBI-ProteinID:
XP_033881246
LinkDB
All DBs
Position
7:61671534..61689685
Genome browser
AA seq
1827 aa
AA seq
DB search
MASTEEDFPRGGTFKKPTDGNAVKHSVEHDNLFESHEPERSKKRKTDKGGDEKKETKQKT
KEALLKLNTGKNVEILHFKKLTVGTLILGCVKEVKDFELVVGLPNGLTGYVQVTSISDGY
TKLLNDQVDAGEAVEEVLTLARLYTPGMVVRCVVSTLGLTKEGHHSVKLSINPREVNKGL
NAASLKPGMHISGCVASIEDHGFLIDVGIGRAKAFLPRQKALDDLRATEQGGDLQVGRYL
NCLVEEVKNEGRIVRLSVNPDAIAKALAEKEQGWTLSNLLPGLVVKAQIKKLTSHGITLE
FLSSFCGSVDFMQMDPEKEKVYQQGLQVKACVLYVHPSSRTVGLSLRPCFLQPGSVVEPL
TSARIGEVIEGCTVKAFHQDAGATLLLPDGMLVFAHKNHLKEALEPLKTNKMGSGSSHTC
RILDYSPMDQVALVSLRKSVIDAPFLRYQDIRPGQHIECKVTSLERYGMQVKVTDHIRGL
VPRTHLADILLKNPEKKYSPGDEIRCRVLTVIPDTKKLILTRKKALVESKLPLICSYEDA
RPGRVAHGYIVCVKDFGCIVRFFNEVNGLVPRHELSTEPVPFPEKIFYSGQVVKAKVLKC
DPEQQRLLLSFKATGGSVAAEVARVEQAQGKEAFHFETGKIVKVTVVRKTVDGLDVSILP
EAASAFLPMMHLSDHVSNCRLLWEGLGEDDIISNVMCLSKNKEHIVLCKKPIIKAAVEEG
YPAKDFSEVQSGMMLPGFIKNIMPYGVFVEFPYGLMGLAPKSAMCDKFVTNTSDHFQVGQ
TVLAKVTNLDEGKRRFLLSLKVSECSSGEEWGQESLQLLTQCLVERRDVCSMMTSRGDSE
VAQNLSKLVLGQKLKLAVEEVKDDGTAYFKASQVAGATASATKHHLTGVSLDPGQNVTAV
ILHVNHLTSQVHLSLRTELVNSRTTKLKENTTHSATVQHVETDFAIASLAETGQLAVVPV
ATHLNDTFRFESEKLSVGQTLVVSVRQPSCEAVGGLPLVVQGPEKAKRKRKLSESKEEAP
RGIQHSCCLGDTVSGTVKSIRPTCVLLALERGITGSIHASEILETVKPFSFPTSSLKMGM
KITARVIGGREAKSHKFLPVTHSHFTFTIPELTVQPSKLKGDWSEELKDQPLSEKLKSYQ
PGQEVTCFVSKFNSLKKSLEVEVTHDVRGTVELLAMTCKPKDLKRPEKLFKPGQALNALV
VCTNSSETRLCLSLSGVHSLGEGSLTLGTVTKVTPHVGLIVSLPFRQCGRAGILDLSDTY
TASPLEQFHVGQTVRCCVLAREDEKIHVSLRQSRTNPVSNLKGNDPEILSIEDLKKGQIV
RGYVKSVGDAGVFIGLSRTITGRSQYQHVTDYFVSDHSVYVKNIPLGKLLICKVLSVDKK
QNRVELSLLPEDTGEPDVLPESLRLPSREKGEQKEKRQGFKKMQQKRKRGASESEQEIAV
ENKKVTKSQKKSEDKDNGVEVYFREEEEPQKQKKPFVHSKSEAPPRLQVSAGFSWDVTLS
SLQPVGTGRGAPASDSEEEEEEVKPQKKSKREKNVEKQRQEKELSKVEGELMDPGRQPQT
ANDFNRLVLGSPDSSIVWLQYMAFHLHATEIEQARAVAERALKTISFREEQEKLNVWVAL
LNLENMYGTEESLNKVFERAVQHCEPLKVFQSLADIYTKSDKYKQAESLYNTMLRRFRQE
RSVWLSCATFHLRQGRTDETHRLLQRALKCLPDKEHVDLIAKFAQLEFRFGDPERAKSMF
ESTLGNYPRRTDLWSVYIDMMIKYGSQKEVRNILERVIHLSLAAKRIKFFFKRYLEYEKK
HGCAESVQVVKEKAMEYVEAKGSITES
NT seq
5484 nt
NT seq
+upstream
nt +downstream
nt
atggcatcgactgaggaagactttccccgaggagggacattcaaaaagccaactgatggg
aacgctgtaaaacactctgtggaacacgacaacttgtttgagtcccacgaacctgaacgg
agtaagaagagaaagacagataaaggaggggatgagaagaaagaaacaaagcaaaagaca
aaagaggcactcctcaaactcaacacggggaaaaatgtggaaatccttcatttcaagaaa
ctcacagtgggaacgctgatcctgggctgcgtgaaggaggtgaaagattttgagctggtg
gtgggcttaccaaacggactcaccgggtatgtccaggtgaccagcatctctgacgggtac
accaagctgctgaatgaccaggtggatgctggggaggccgtggaggaagtcttgaccctt
gcccgcctctatacccctggcatggtggtcaggtgtgttgtgtccaccctgggattgacc
aaagaaggccatcacagtgtcaaactgtcaatcaaccccagagaagtcaacaaggggctg
aatgctgcatctctcaagcctggcatgcacatttctggctgtgttgcaagtatagaggac
catggcttcctgatcgatgttggcattggcagagcgaaggcttttctacccagacagaaa
gctctagatgacctcagggcaacagagcagggaggggacctgcaggtgggccggtatctg
aactgcctggtggaggaggtgaagaatgagggccgcatcgtacgcttgtctgtcaatcca
gatgccattgccaaggccctggcagagaaagagcaaggctggacgctcagtaacctgctg
cctgggctggtggtgaaagctcagattaagaagttgacctctcatgggatcactctggag
ttcctctcctcgttttgtggatcggtagacttcatgcagatggacccagagaaagagaaa
gtctaccagcaaggactccaagtgaaagcctgtgtgctgtatgtccatccctcctcccgc
accgtggggttaagcctgcggccctgcttcctgcagcccggcagtgtggtggagcctctg
acgagcgctcggatcggggaggtgattgagggctgcacagtcaaggctttccaccaggac
gccggtgccactctgctgctgcccgatggcatgctggtttttgcacataaaaatcaccta
aaagaagccctggagcccttgaaaaccaacaagatgggctcaggatccagccacacgtgc
aggatcctagattatagccccatggatcaggtggcgctagtgagtctaaggaagagtgtt
atcgatgctcctttcctgagataccaggacattcgacctggacagcacattgagtgcaaa
gtgacttccctggagcgttacgggatgcaggtgaaggtgacggatcacatccgcggcctg
gtcccacgaacacacctggcagacattctcctgaagaacccggaaaagaagtacagcccc
ggggatgagatccggtgtcgggttctaaccgtgattcccgacaccaagaagctgatcctg
acccggaagaaggctctggtggagtccaagctgccgctgatctgcagctatgaggatgcc
aggccgggccgggtggcacacggctacatcgtgtgtgtcaaggacttcggctgcatcgtg
cgcttcttcaacgaagtcaatgggctggtccctcggcatgagttgagcacggagcctgta
ccgtttcctgagaagatcttttacagtgggcaggttgtcaaagcgaaagtgctgaaatgt
gaccctgagcaacaaaggctgctgttgtccttcaaagccacagggggcagtgttgctgct
gaagtagccagggtggagcaggctcaggggaaagaggcatttcactttgaaactgggaag
attgtaaaggtgacggttgtgcgcaagactgtcgatggactggatgtttcaattcttcca
gaggcggcgtcagccttcctgcccatgatgcacctctctgaccatgtgtccaactgcagg
ctcctgtgggaggggcttggagaggacgacatcatctccaacgtgatgtgcctgagcaaa
aacaaggagcacattgtactttgtaagaagcccattatcaaggctgcggtcgaggaaggt
tatccagccaaagacttttccgaagtccagtctggaatgatgctgcctggattcataaag
aacataatgccgtatggagtctttgtggaattcccctatgggctgatgggattggcaccc
aaatctgccatgtgcgacaagtttgtgaccaacacaagcgatcatttccaggtagggcag
acagtgctggctaaggtaaccaacctggacgaggggaagcggcggttcctgctgagcttg
aaggtgtcggagtgtagctcgggggaggaatgggggcaggagagcctgcagctgctcaca
cagtgcctggtagagaggagagatgtgtgcagcatgatgaccagcagaggtgattctgaa
gtggcccagaacctctccaagctggtgttggggcagaagttaaaactggctgtagaagaa
gtgaaggatgatgggacagcttactttaaagctagccaggttgctggagcaacagcgtcg
gccacaaagcatcacctgactggtgtgagtcttgacccgggacagaatgtcactgcggtc
atcctgcatgttaatcacctgacctcccaggtccacctctctctcagaacggagctggtc
aacagcagaaccacgaagctgaaggagaacacaacacattcagccacagtccagcatgtg
gagacggactttgccattgcatcattagccgagactggtcagctggccgtagtccctgtg
gcaacccatctgaacgacaccttccggtttgagtctgagaaattgtctgttggacagacc
ctggtggtctctgtgaggcagcccagctgtgaggctgtcggggggcttcccttagtggtt
cagggtccagagaaagccaagcggaaacggaaactctcggaaagcaaagaggaggcgccc
agaggcatccagcactcctgctgcctgggcgatacggtgagcgggactgtcaagtccatc
cgtcccacctgtgtcctcctggctttggagagaggcatcacaggcagcatccatgcgtcc
gagatactggaaaccgtgaagcccttcagcttccccacatcctcactgaaaatggggatg
aaaatcacagccagagtaattggaggaagagaggccaagagtcataagtttttgccagtc
acccactcacactttactttcacaataccggaactaacagttcagccaagcaagctgaag
ggagattggagcgaggagctgaaggaccagccgttgtctgagaagctgaagagctaccag
cccggccaggaggtgacctgcttcgtgtcgaagttcaacagtctcaagaagtccctggag
gtggaggtgacccatgatgtgcgtgggacagtggagctgctggcaatgacctgtaaaccc
aaggatctgaaacgcccagagaagctgtttaaacctggacaggcactgaatgccctggtc
gtctgcaccaactcctctgagacccggctttgcctctccctctcaggagtgcactccttg
ggagaaggctctttgactctggggacggttacaaaggtcactccacatgtgggcctcatt
gtctccttgccattccggcagtgtggtcgagctggcatcctggacctcagtgacacgtac
acggcatcgccgttggaacaattccatgttggccagacagtcaggtgttgtgtcctagca
cgggaagatgagaaaatccacgtgtctctcaggcagtccaggacaaacccagtaagcaat
ctcaaagggaatgaccctgaaattctctccattgaagatctaaagaaagggcagattgta
cgaggatatgtcaaatctgtaggagacgctggagtctttattggactgtccaggacaatc
actggtcgatctcagtatcagcacgtcacagactactttgtgagtgatcacagtgtctac
gtgaaaaacattccactcggcaaactgctcatctgcaaagttctgagtgtggataaaaaa
cagaatcgtgtggaactgtccctgctcccagaggacactggggaaccagacgttctccca
gagtcacttcggcttccttccagagaaaagggagaacagaaggagaagcggcaggggttc
aagaaaatgcagcagaaacgaaagaggggggcctccgagagcgagcaggagattgcggta
gagaataagaaagtgacaaagagtcaaaagaaatctgaggacaaagacaatggagttgag
gtttatttccgggaagaggaagaaccacaaaagcagaagaagccgttcgtgcacagcaag
agtgaagcaccgccccggctccaggtctccgcagggttctcctgggacgttacactgagc
tctctgcagccagtcgggacgggacgaggggcacccgcctcagacagtgaagaggaggag
gaggaggtgaagccccagaaaaagagcaagcgggagaagaatgtggagaagcagcggcag
gagaaggagctgtcgaaggtggagggtgagctgatggaccccgggaggcagccacagacc
gccaacgacttcaaccggctggtgctgggctccccagacagctccatcgtctggctgcag
tacatggccttccacctccacgccactgagatcgagcaggcccgtgccgtggcagagaga
gccctcaagaccatctccttccgcgaggagcaggagaagctgaacgtgtgggtggccctt
ctgaatctggagaacatgtacgggactgaggagagcctgaacaaggtgtttgagagagca
gtgcagcactgcgagcctctcaaagtgttccagagcctcgctgacatctacaccaagtct
gacaagtataagcaagcagagagcctgtacaacaccatgctgaggaggtttcgccaggag
agatcggtctggctgagctgtgccactttccacttgagacagggccgcacggacgagacc
cacagactcctgcagagggcgctcaagtgcctgccagacaaagagcatgttgacctaatc
gcaaagttcgcacagctcgagttccggtttggggacccggaacgggccaagtccatgttt
gagagcacgcttggtaactaccccagacgcacagacctgtggtctgtctacatcgacatg
atgatcaaatacggcagtcagaaggaagtccggaacattttggaacgagtgatccacctg
agcctggctgctaagagaatcaagttcttcttcaagcgctacctggagtacgagaagaag
cacgggtgtgctgagagtgtgcaggtggtgaaggagaaggccatggagtatgtggaggcc
aagggctccatcacggagagctaa
DBGET
integrated database retrieval system
