Acipenser ruthenus (sterlet): 117416458
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Entry
117416458 CDS
T07327
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut04115
p53 signaling pathway
arut04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117416458
09140 Cellular Processes
09143 Cell growth and death
04115 p53 signaling pathway
117416458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
arut04121
]
117416458
Enzymes [BR:
arut01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117416458
Ubiquitin system [BR:
arut04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117416458
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
117416458
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_EIPR1
Beta-prop_RIG_2nd
zf-C3HC4_2
EIF3I
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
zf-C3HC4
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
zf-RING_2
Beta-prop_EML
Beta-prop_DCAF4
zf-RING_UBOX
zf-C3HC4_3
Beta-prop_WDR90_POC16_2nd
zf-RING_5
zf-C3HC4_4
RING_XB3-XBAT31
WD40_RFWD3
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_IFT122_1st
Beta-prop_NUP159_NUP214
zf-RING_10
zf-rbx1
UvrD-helicase
WDR90_beta-prop_4th
Sina_RING
zf_C2H2_10
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
117416458
NCBI-ProteinID:
XP_033883423
LinkDB
All DBs
Position
11:34356006..34388267
Genome browser
AA seq
708 aa
AA seq
DB search
MSTSRQQHQNGGGVGSGPGTSSSNSGGSSSSGSGNTSNGDGSGNAVSSRTLGTGIGALAV
PILGVPSSRSSAVSLGRPGSSSGSSSRKRPLPTPLCNGLINSYEDKSNDFVCPICFEMIE
EAHMTKCGHSFCYKCIRKSLKDSNRCPKCNYIIDNVDQLYPNFLVNELILKQKQRLDEKR
LKLDHPNGHRWQVFQDVLGTDQENLDLANVNFMLELLVQKKKQLEAESQAAQLQILMEFL
KEARRNKREQLEQLQKELNFLEEDIKRVEEMSGLYSPGSDLDHNLDSTVPQFEAPSPSHS
SIIDSTEYSQPPGFSGSSQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNRMSRITDES
RTANQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAGVTK
KIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDGFTG
QRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCCVKF
SPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDSQLK
LWNVNKPHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKFDTV
KSVLDKDKKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaccagccggcaacagcatcagaacggcggcggagtggggtcgggacctgggact
agcagcagcaacagcggcggtagtagcagtagcggcagcggtaacactagtaacggggac
gggagtgggaacgcggtctcgtcacggacactgggtactgggattggggcattagcagtg
cctatactgggggttccctcctcccgtagtagcgcagtttctttggggagacctggctcg
tcctcgggcagtagcagcagaaagcggccccttccgacacccctctgcaacggcctcatc
aattcctacgaggacaagagcaatgattttgtgtgtccaatctgttttgagatgatcgag
gaagctcatatgacaaaatgtggacatagtttttgttacaagtgtattcgaaagagtctg
aaagacagcaacagatgtccaaagtgtaactatattattgacaatgtggatcagctatac
cctaactttctagtgaacgaactaatcctcaaacaaaagcagaggttggacgagaaacga
ctgaaactggaccatccgaatggacaccgatggcaagttttccaagatgtgcttggtaca
gatcaagagaacttggacctggccaatgttaatttcatgctggagcttctcgtacagaaa
aagaaacagcttgaggcggagtcacaagcagcccagctccagattttaatggaatttcta
aaggaagccagaagaaataagagagagcaactggagcagctgcagaaggagctgaacttt
ttggaggaagatatcaagcgtgttgaggaaatgagtgggttgtactcccctggtagtgat
ttggaccataatctggatagcactgttcctcagtttgaagccccttctccctcacacagc
agtattatagactctacagagtacagccagccaccagggttcagtggaagctcacaggga
aagaggcagacttggtacaacagtacacttgcatctcggcggaaaagactcacagcacac
tttgaggatttagaacagtgttacttttctaaccggatgtctcggataactgatgaaagc
aggaccgccaaccagttggatgattttatggagtgtctttctaaattcacacgctacaat
tcggtcagacctctagccacactgtcctatgccagtgatctctacaatggttccagtatt
gtctccagtattgaatttgaccgcgactgtgattattttgccattgctggtgttacaaag
aaaattaaagtatttgagtatggaacagtgatccaggatgcagtggacattcattatcct
gtcaatgagatgacctgtaactccaaaatcagctgtatcagctggagtagctaccacaag
aacctgttagccagcagtgactatgaaggcactgttatcctgtgggatggcttcactgga
cagagatcaaaggtctaccaggagcatgagaaaagatgctggagtgtcgactttaatcta
atggaccctaagctcttggcttcaggctctgatgatgcaaaagtgaaattgtggtctaca
aacctggacaactcggtagctagcattgaggcaaaggcaaacgtgtgctgtgtgaaattc
agcccaacatcacgttaccaccttgcttttggctgtgcagatcactgtgtccactactat
gatcttcgaaacacgaagcagcctatcatggtattcaagggccacaggaaggcagtctcg
tatgccaagtttgtcaatggagaggaaattgtgtctgcatctacagacagccagctgaag
ttatggaatgtaaacaagccccactgcctgcgttcatttaagggtcacattaacgagaaa
aactttgttggtctggcatctaatggagattatgttgcatgcggaagtgaaaacaactcc
ctttacctgtattataagggcctctcaaagacactgttgacgtttaaatttgatacggtg
aaaagtgtgctggataaagataaaaaggaggatgacaccaatgagtttgtcagtgctgtg
tgctggagggcattgcctgatggggagtccaatgtgttgatcgcagccaacagccaaggt
acaatcaaggtactggaacttgtatga
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