Acipenser ruthenus (sterlet): 117417199
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Entry
117417199 CDS
T07327
Symbol
hfm1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1
KO
K15271
ATP-dependent DNA helicase HFM1/MER3 [EC:
5.6.2.4
]
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
arut03036
]
117417199 (hfm1)
Enzymes [BR:
arut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
117417199 (hfm1)
Chromosome and associated proteins [BR:
arut03036
]
Eukaryotic type
Meiosis-specific proteins
Others
117417199 (hfm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_C
ResIII
DEXQc_Suv3
AAA_22
Motif
Other DBs
NCBI-GeneID:
117417199
NCBI-ProteinID:
XP_033885071
LinkDB
All DBs
Position
11:complement(38318300..38341736)
Genome browser
AA seq
1530 aa
AA seq
DB search
MFEPEDYTMTLDSLFFERPVVQKVTPLCNDQGSWQLAPAPSISEIPATQDLQNEFKSLWS
SDSTERPKKFIPPMKKTTERENSFQEKCNLQNDEIYEIGLEATSINSQQILRNESSDTQL
QQDSAQLLDLRTLHPSSRNHGANNQFRKSLFKTPQPKILRSFVNTSSGLETSEPGDSSNV
TLSEFIDDEFVKTVENIQSPLHGSGLELFSTCDSATAKYRQTTKTAHVLPLTPQPLNVQG
EICSGVLRPVTEIPAQFRSVFKEFPYFNYIQSGALDELLYTNRNFVICAPTGSGKTVLFE
LAIIRLLMEVPPPWSNIKAVYMAPIKALCSQRYDDWKPKFGPLGLNCKELTGDTEMDDFF
EIQDAQLIMTTPEKWDSMTRKWRDNCLVQLVRLFLIDEVHVVKDPTRGATLEVVVSRMKT
MHSSLSCGSDNPDSKVPMRFVAVSATIPNITDISDWLSDGTEPATCLEMDETHRPVKLRK
VVLGFPCSGNQTEFKFDLSLNYKMASIIQTYSDQKPTLVFCATRKGVQQSGSVLAKDAKF
IMSIEHKQRLQKCANSLQDSKLRDLVMYGVGFHHAGMEVSDRKKIESVFTLGDLPVLFTT
STLAMGVNLPAHLVVIKSTMHYIGGMFQEYSETDILQMIGRAGRPQFDTTATAVIMTRFQ
TKEKYTHLVSGADTIESSLHKHLVEHLNAEIVLHTISNVKVALDWIRSTFLYIRALKNPS
HYGFPPGLDRAGIEAKLQELCLKNLNALSSIGLITMDEDINFKPTETGKLMARYCIAYDT
MKQFTLVPGTGTLSDLLTLISKSKEFSDVQLRVNEKRTLNTLNKDKNRITIRFPVDGKIK
NNEMKVNCLIQAQLGCMAVQDFGLTQDTGRIFRNGTRLTKCLSEFFAQHAKKNFSALLNS
LILAKCFRSRLWENSPFVSKQLEKIGVTLSTAMVNAGLTTFQKIEETHARELEMIVNRHP
PFGNQIREAVIHLPKYEVSVEQIARYNASIAEIIVTVNLTNYEQLRIKRTAPDNHYVTLL
IGDCDNELVFQQKLTDSLLLKSGSWSKKIEVTRALKGEELSVNLISSEYVGLDIQQKYSA
FYSGPKRFGTHANMWEKPQSEHLQVTAQSAETSVVRTPRSSKEITCPDPAKRQCNHYCKN
KEQCGHECCKVGVPVLHKSVTQPQSNFSSYLRDLKSRNETLAVTPVKRLKMKMSEDVDAV
DLQQFSYTRKTPVSSVARRERMPTGLPTQADKWEALDDFATPQQLGNVDYYGEDNENYSC
SYPNWNVMEYEDQISVPSTAASKSKNNDRGHCIDYHNWNIKGLEDQLPALDTAKSEKFSV
WNKSINGNLRNPTLGTQNKAAMNFVKQSMSDADESGYLSSDTLNVTFDLGVDDWDDFDDE
SLVHASNLTTAEIPKPKPERPEGFSSTLFSKVDKAKPALEEFHRSGTYRTTAKDSSAVQT
SYSSAVSYLPPDFRRFSNETTKCYTEMYGNKPASSYSRENETKLSTSNGMFDFFTKQSNV
KSALEVNGRHEEEDKSNDVNAFLGIFDGIF
NT seq
4593 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaacctgaagattacacgatgactttggatagtttgttttttgaaagaccagtt
gttcagaaagtaactcccttatgtaatgaccaaggaagttggcagcttgcccctgcacca
tcaatttctgaaataccagccactcaggatttacagaatgagttcaaatctctctggtct
tcagattctaccgagagaccaaaaaaattcatcccgccaatgaaaaaaacaacagaaaga
gagaattcctttcaagaaaaatgtaatcttcagaatgatgaaatatatgaaattggttta
gaagctaccagcattaattcccaacaaatactcagaaatgaaagttcagacactcagttg
caacaggattcagcacagttgttggatttgagaactttacatcccagttctagaaaccat
ggagcaaacaatcagtttagaaaaagcttgtttaaaactccacagccaaagattctgagg
agtttcgtcaacacatcatcaggtctagaaactagcgagccgggtgacagttctaatgtc
acattgtctgagtttatagatgatgaatttgtgaaaaccgttgagaacattcagagcccc
ttgcatggctcgggtcttgaactgttcagcacatgtgattctgccactgcaaaataccga
caaaccacaaaaacagctcatgtccttcctttaacaccacaaccacttaacgtacaaggt
gagatctgttcaggagttctgaggccagttactgaaattcctgcacaattccgatctgtt
tttaaggagtttccatatttcaattatattcagtctggagctctagatgaacttctttac
accaatagaaattttgttatttgtgctccaactggttctggaaaaactgtactctttgaa
ctcgccattattcgtttgcttatggaagtcccaccaccatggtccaacattaaagctgta
tacatggcaccaattaaggctctgtgcagtcaacgctatgatgactggaaaccaaaattt
gggcctttagggctgaattgcaaagagctgacaggagatacagaaatggatgacttcttt
gagattcaagatgctcagcttatcatgactacaccagaaaaatgggacagcatgacaagg
aagtggagagataattgtttggtccagttggttcgactgtttcttattgatgaggttcat
gttgtaaaagatccaacacgtggagcaactctcgaggttgtggtcagtagaatgaaaacc
atgcattcctccctgtcatgtgggtcagataatcctgactctaaagtccctatgagattt
gtggctgtttctgcaacaattccaaatataacggatatttcagattggctgtcagatggt
actgagccagctacatgtttggaaatggatgaaactcataggccagtgaaacttcgcaaa
gtagttcttggatttccctgctctggcaaccaaaccgagttcaagtttgacttatccctt
aattacaaaatggcaagcatcattcaaacatattccgatcagaaaccaacacttgtgttt
tgtgcgacaagaaagggagtacaacagtctggatctgttcttgcaaaagatgccaagttt
attatgagcattgaacataaacaaaggttacaaaagtgtgccaactccttgcaggactca
aaactgagagatttagtgatgtatggagttggattccaccatgctggtatggaggtatct
gacagaaaaaaaattgaaagtgtttttacccttggagacttaccagtactttttacaaca
agcaccttagctatgggtgtgaatctgccagctcacttggtggttatcaaatcgacaatg
cattacattggaggaatgtttcaagagtacagtgaaactgacatactgcaaatgattgga
agagcgggcaggccccagtttgataccacagctacagcagtaataatgaccaggttccag
acaaaagagaaatatacacatcttgttagtggtgctgacacaatagaaagcagcttgcac
aaacaccttgttgaacatttaaatgcagagatagttttgcacacaatctccaatgttaaa
gttgctctggactggataagatccacgtttctttacattagagctctgaaaaatcccagc
cattatggttttccacctgggctggacagagctggaattgaagccaaattacaagaactt
tgtctcaagaatctaaatgcgttgtcttcgattggcttgataacaatggatgaggatatc
aattttaagccaacagagactggaaagctaatggcacgctattgcattgcatatgataca
atgaaacagttcacccttgttcctggaaccgggacattgtcagacctgctcacactgatt
tctaaaagcaaagagttttcagatgtccagctgagggtaaacgagaagagaacattgaac
accttaaacaaagacaaaaataggataaccatcaggtttcctgttgatgggaaaataaaa
aacaatgaaatgaaagttaactgcttaatacaggcacagctaggctgcatggcagttcaa
gattttggtttgacacaagatacaggaagaatattcagaaatggaactagactaacaaaa
tgtttgtctgagttttttgcccaacatgcaaagaagaacttttcagctctgctcaactca
ttgattctggccaaatgttttaggtccagactttgggaaaactctccatttgtatcaaag
caacttgagaagatcggtgtgacactatcaaccgcaatggtaaatgcaggacttacaaca
ttccagaagattgaagaaactcatgcacgagaactggagatgattgtgaatagacaccct
ccttttggaaaccaaataagagaagctgtcatacaccttccaaagtatgaagtcagtgta
gaacagattgcaaggtacaacgcatcaattgcagagatcattgtcacagtcaatttaaca
aattacgagcagctcaggataaagagaaccgcaccagacaatcattacgttaccttgctt
ataggagattgtgataatgaactggtttttcagcaaaaactcactgattcacttctgcta
aaatctgggagctggtctaagaaaattgaagtcacaagagcactcaaaggcgaggaactg
agtgtgaatcttattagttcagagtatgttggacttgacattcagcagaagtacagtgcc
ttttactctgggccaaagagatttggaactcatgccaacatgtgggagaagccacaatca
gaacatttacaggtcacagcacagagtgctgaaacatctgtggttcgtacacctagatcc
tccaaggaaataacctgtcctgatcctgcaaagagacaatgcaaccattactgtaaaaac
aaagagcaatgtggccatgagtgctgtaaagttggagtgccagtactacacaaaagtgtt
acacagccacagtccaacttttcttcatacctaagagatctaaaaagtaggaatgaaaca
ttagcagtgacacctgtgaaacgtctaaagatgaaaatgtcagaggatgttgatgctgtg
gaccttcagcagttttcatatacacggaaaactcctgtgtcttctgtagcaaggcgtgaa
agaatgccaactggtctaccaacccaagcagacaaatgggaggccttagatgattttgca
acaccacagcagctgggaaatgtggactattatggtgaagataacgagaactactcttgt
agttaccccaattggaatgtcatggaatatgaagatcaaatttctgttccaagcactgca
gcttcaaagagtaaaaataatgacagaggccactgcattgattatcataattggaatatt
aagggacttgaagatcagttgcctgcactagacactgcaaaatcagaaaaattttcagtg
tggaacaaatccataaatggaaatctaaggaatcctaccctgggcactcaaaacaaagct
gcaatgaattttgtcaagcaaagtatgagtgatgctgatgaaagtgggtacctttcatca
gacactttgaatgtgacatttgatctaggagtagatgattgggatgattttgatgatgag
agtttggtgcatgcaagcaatcttacaactgcagaaataccaaaaccaaagccagagagg
ccagaagggttttcatcaacattattctcaaaggttgataaggccaaaccagcattagaa
gaatttcacagaagtggaacctataggacaaccgctaaagacagtagtgcggtacaaacg
tcatacagttctgctgtcagttatttgccaccagacttcaggagattctcaaatgaaaca
actaaatgttacactgaaatgtatggaaacaaaccagcatcttcatactccagagaaaat
gaaacaaaactgtctacatcaaatgggatgtttgatttctttacaaagcagagtaatgtg
aagagtgctttggaggtcaatggcaggcatgaagaggaagacaaatcaaatgatgtgaat
gcattccttggaatatttgatggaatattttaa
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integrated database retrieval system
