Acipenser ruthenus (sterlet): 117417449
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Entry
117417449 CDS
T07327
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117417449
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
arut00536
]
117417449
Glycosaminoglycan binding proteins [BR:
arut00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117417449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
ATP-grasp_4
GAGA_bind
Motif
Other DBs
NCBI-GeneID:
117417449
NCBI-ProteinID:
XP_033885498
LinkDB
All DBs
Position
11:complement(32728790..32823647)
Genome browser
AA seq
1873 aa
AA seq
DB search
MEMQKWSTRWKTKRWLLDSTLIITFTFVLQTANVRAADPVDVLKVLDFHSSPEGVKKTTG
FCTNRKNSQGSDTAFRVGKQAQLSAPTKQLYPGGVFPEDFSILTTIKPKSGIQSFLLSVY
NEQGIQQLGVEVGRSPVFLYEDQYGKPAPEDYPLFRTLNIADGKWHRVAISVQQKTVTII
FDCKKKITKPLSRSDQAVINTDGITVFGTRILDEEVFEGDIQQLLIVADPRAAYDYCEHY
SPDCETSHPNAPQAQEPQVDEQKKKPNSFSKKKKVKKPTKTKDKPLKFTSKKSEKLAAKK
KKAMPGYQAAAPARTSVNLGVNNVDETEEYDYGTVESYQTQTPTASAGENEAVEEEFIDE
YVTGEDYGVEKKFTEEAAETVETKETVGTVETVATGETVETGAAGKTVETGAAGETVDQG
ANEYDFKEYDVKEHDLKEYDLNEYDLNNYDKKEYGEYDYKEEVPTTEEEFGPGVPAETDV
TESKVNGQGFFGQKGDKGEPAIIEPGMLIEGPSGPEGPAGLPGPSGLQGPPGPPGDPGDR
GPAGRAGLPGADGLPGPPGTMLMLPFRFGGDGEKGPVVSAQEAQAQAILSQARLAMRGPS
GPMGLTGRSGPVGVPGATGLKGDGGDPGPQGPRGSQGPPGPPGKSGKRGRSGADGARGMP
GEPGTKGDRGFDGLPGLPGEKGHRGELGPPGPPGGPGDDGERGEDGEIGPRGLSGESGPR
GLLGPRGSPGPTGQPGVAGVDGPQGPKGNMGPQGEPGPSGQQGISGPQGLPGPQGPIGPP
GEKGPQGKSGLPGLPGSDGPHGHPGKEGPPGEKGAQGQSGPQGPIGYPGPRGVKGADGVR
GLKGGKGEKGEDGFPGFKGDMGLKGDRGELGQGGPRGEDGPEGPKGRAGPNGDSGSPGLA
GEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGLVGKSGPRGQRGPTGPRGGR
GARGPTGKPGPKGTSGNDGPPGPPGERGPQGPQGPVGFPGPKGPPGPAGKDGLPGHPGQR
GETGFQGKTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDP
GPQGTSGKDGPSGLRGFPGERGLPGATGPAGLKGGEGPQGPSGPIGSPGERGAAGPGGPI
GLPGRPGPQGPPGPAGEKGGPGEKGPQGPAGRDGIQGPVGLPGPAGPQGPPGEDGDKGEI
GEPGQKGSKAAKGEQGPPGPAGLQGPVGAPGPAGGDGEPGPRGQQGMFGQKGDEGSRGFP
GLPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGGLGSVGAV
GEKGEHGEAGNPGPPGESGTGGPKGERGEKGESGPPGAAGPAGRKGPPGDDGPKGNPGPV
GFPGDPGPPGEAGPAGQDGSGGEKGDDGEAGQPGPPGPSGEAGPPGPPGKRGPPGLAGAE
GRQGEKGAKGEAGSEGPQGKTGPVGPQGPPGKQGSEGLRGIPGPVGEQGLPGASGQDGPP
GPMGPPGLPGLKGDPGTKGEKGHPGLIGLIGPPGEQGEKGDRGLPGLQGSHGSKGDSGIG
GSPGPLGPPGPPGLPGPQGPKGSKGSLGSVGQKGDTGVAGPPGLPGPPGEVIQPLPIQSP
KKTRRSSEQADEAGNVLDYSDGMEEIFGSLNTLKQDIERMKYPMGTQNNPARTCKDLQLC
HPEFPDGEYWIDPNQGCSGDSFKVYCNFTSGGETCIYPDRKSEAVRISSWPKETPGSWFS
EFKRGKLLSYVDVEGNQINTVQMTFLKLLSASARQNFTYNCHQSVAWHDVSSDSFDKALR
FLGSNDEEMSYDNNPYIKALYDGCALRKGYEKTVMEINTPKIDQVPIVDVMLNDFGDPNQ
KFGFVVGPVCFLG
NT seq
5622 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaagtggtccacaaggtggaaaacgaaaaggtggctcttggattccact
ttaatcatcacttttactttcgttctgcagactgcaaatgtcagagcagctgatcctgtt
gatgtgctcaaagtattagactttcacagttctccagaaggggttaaaaaaacaacaggc
ttttgcacgaatagaaaaaactcacaaggatcagacacagccttcagggtcggaaaacaa
gcacaactcagtgccccgacaaagcagttatatccaggtggagtgttcccagaagatttc
tctatcctaacaacgataaaacccaagtcagggatccagtccttcttgctgtcagtgtac
aatgagcagggaatccagcagctgggagtggaggtgggcagatccccggtgttcctgtat
gaggaccaatacggcaaaccagcccctgaggattatcctttgttcaggactcttaacatt
gcagatggaaagtggcatcgggtagctatcagtgtacagcaaaaaactgtaactatcatt
tttgactgtaaaaagaaaatcacaaaaccactcagcagaagtgaccaggctgtcatcaac
actgatggcataacagtgttcggtaccaggattttggatgaagaagtctttgagggtgat
atccagcaactgcttattgtagcggatcccagagcagcttatgactactgtgaacactac
agcccagactgtgaaacctctcatcccaacgctccccaagctcaggaacctcaagtggat
gaacagaaaaagaaaccaaattccttcagcaaaaagaagaaagtgaaaaaacccactaaa
actaaggacaaacctctaaagttcacttccaaaaaatctgaaaaattagcagctaagaag
aagaaagcgatgcctggttaccaagcagcggcaccagcaagaacatcagtcaatctaggg
gtcaacaatgtcgatgaaacagaagaatacgattacggaaccgtggagagttatcagact
caaactcccactgcttcagccggggagaacgaggctgtcgaagaagaatttattgatgaa
tatgtaactggagaggattatggtgtggagaaaaaattcactgaggaagccgcggaaact
gtggaaaccaaggaaacggtgggaacagtggaaaccgtggcaactggggaaacagtggaa
actggggcagctgggaaaactgtggaaactggggcagctggggaaactgtggatcaagga
gccaacgaatatgacttcaaagaatatgacgttaaggaacatgatcttaaggagtatgat
cttaatgagtatgaccttaataattatgataaaaaagaatatggggagtatgactataaa
gaggaagtaccaactacagaggaggagtttgggccgggtgttccagctgagactgatgtg
acagagagtaaagtaaatggccaagggttttttgggcagaagggagacaaaggtgaacca
gcaattatcgaacctggaatgcttatagaaggcccctcagggccagaaggccccgccggt
cttccaggtccttcaggtctacaaggccctcctggtcctcccggggatcccggtgacagg
ggccctgcaggccgtgctggtctcccaggtgctgatgggttgcctggacctccgggtacc
atgctcatgctgccattccgttttggcggagatggagagaaaggaccagttgtctcagcc
caggaagcgcaggcccaggctattctctctcaagccaggcttgctatgagaggtccatca
ggtccaatgggtctcactggaaggtctggtcctgtgggagtccctggggcaacaggtctt
aaaggtgatggtggtgatccaggtcctcagggtcctcgtggttctcaaggtcctcctggt
cctcctggcaaatctggcaaaaggggccgatcaggtgctgatggtgccagaggaatgcca
ggggaaccaggaacaaagggtgacagaggatttgatggacttcctggtctgcctggtgaa
aaaggtcatagaggagaactcggtccaccaggcccccctggcggacctggtgatgatgga
gaaagaggagaagatggagagattgggccaaggggtctttctggcgagagcggcccaaga
ggattgctcggaccaagagggtctcccggtcccaccggacagcctggtgttgctggagtt
gatggtcctcagggtccaaaaggaaacatgggtcctcaaggagagcctgggccttccgga
cagcagggaatctctggcccacaaggtcttccaggtcctcaaggccctattggtccacct
ggtgaaaaaggaccccagggtaaatctggtctccctggcttgcctggttcagacgggcct
catggtcacccgggcaaagaaggtccacctggagaaaaaggtgcccaaggacagtccggc
ccacaagggccaattggatatcctggtccccgaggtgtaaagggtgctgatggcgtccgt
ggtcttaagggcggcaagggtgaaaagggagaagatggtttcccaggtttcaagggtgat
atgggtctcaaaggggacaggggtgaacttgggcagggtggtccaagaggtgaagatggc
cctgaaggcccaaaaggtcgcgctggtcccaatggtgactctggctcacctggtcttgct
ggtgaaaagggaaaacttggtgttccagggttgcccgggtatccaggaagacaaggtcca
aagggctccactggtttccccggatttccaggagccaatggagagaaaggtgccaggggt
cttgtaggaaaatcaggtccaagggggcaaagaggtccaacgggtccacgtggtggtcgt
ggtgccagaggtcctactggaaaaccaggtcctaagggtacatcaggcaatgatggtcca
cctggcccacctggagaaagaggacctcaaggacctcagggtccagtcggatttcctgga
ccaaagggcccccctggaccagctggtaaggatgggctgcctggtcaccctggacagcgg
ggagagactggcttccaaggaaagactggtcctccaggccctggcggtgtggttggtcca
caggggcctactggtgagaccggccccattggtgagagaggtcatcctggcccccctggt
cctccaggtgagcagggtctaccaggagctgctggaaaagaaggcgctaagggagaccca
ggtccccagggcacttctggcaaagacgggccttctggactgcgaggatttcctggtgaa
agaggtctgcccggtgccacgggtccagctggtttaaagggaggagaaggcccacagggt
ccctcaggcccaattgggtctccaggagagcgtggtgccgctggcccaggaggtccgatt
ggtcttcctggtcgcccaggtccccaaggcccacctggcccggcaggagagaagggtggt
ccaggtgagaaaggtccccaaggcccagctggccgagatggcatccagggtccagttggt
cttccagggcctgctggtcctcagggccccccaggagaagatggcgacaagggagaaatt
ggtgaaccaggtcaaaaaggaagcaaagctgctaagggtgaacaaggtcctcctggtcca
gcaggtcttcaaggtcctgtcggtgctcctggcccagctggaggtgatggagagccaggc
cccaggggtcagcagggaatgtttggccagaaaggtgatgaaggttctcgtggtttccct
ggccttcctggtccaattggtcttcagggtcttcctggtccaccaggtgagaaaggagaa
aatggagacgttggtccaatgggtccccctggtcccccaggccctagaggtcctcagggt
ccgaatggagctgatggtccacaaggtccccctggtggcctgggctctgttggagcagtt
ggtgagaagggtgagcacggtgaagcaggtaaccctggacctccgggagaatcaggcact
gggggtcctaaaggagagaggggagagaagggcgaatcaggtccacctggtgctgctgga
ccagctggtcgcaagggacctccaggagacgatggtcccaagggtaaccctggtccagtt
ggattccctggagaccctggtccccctggtgaggctggtccagctggccaagatgggtca
ggtggagagaagggagacgatggagaagctggtcaacctggtcctcctggtccatctgga
gaagctggcccacctggtcctcctggtaaaagaggtcctcctggattagctggtgctgaa
ggcaggcaaggagaaaagggtgcaaagggagaagctggttcagagggtccacagggaaag
actggcccagttggtccacaaggtcccccaggaaagcaaggctcagagggtcttcgtggt
attccaggccctgttggtgaacaaggacttccaggcgcatcgggacaagatggcccccct
ggacctatgggtccacctggcctccctggcttgaaaggcgatcctggtactaaaggtgaa
aagggtcatccaggtttgattggtctcatcggtccacctggcgagcagggagagaagggt
gaccgaggtctgcctggcctacaaggttctcatggctccaagggtgactcaggtatcggt
ggttcacctggtcctcttggtccccccggtcctcccggtctcccaggtcctcaaggtcca
aagggtagcaagggttctttgggttctgttggtcaaaagggtgacacaggtgtggcaggt
cctccaggtcttcctggtcctcctggtgaggttatccagcctttgcctatccagtctcca
aagaagaccaggagatcatctgaacaagctgacgaagccggaaatgtcctggattactca
gacggcatggaagagatctttgggtcgctcaacacactcaaacaagatattgaacgcatg
aagtaccccatgggtacccagaacaacccagcacgaacctgcaaggacctgcagctttgc
catccagagttcccagatggtgaatactggattgatcctaaccagggttgctctggagat
tccttcaaagtttactgtaacttcacatctggcggcgagacttgtatctacccagatagg
aagtctgaggcagtcagaatctcctcctggcccaaggaaactccaggatcttggttcagt
gaatttaagcgtggcaaattactctcatatgtggacgttgaaggcaatcaaattaacacg
gtccaaatgacattcctgaaattactgagtgcctctgccagacagaatttcacttacaac
tgtcatcagtccgtggcctggcatgatgtctcatccgacagctttgacaaggctctgagg
ttcctgggatcaaatgacgaggagatgtcttatgataacaatccgtacatcaaagccctc
tatgatggttgcgcattgaggaaaggctatgaaaagactgtgatggagatcaacacacct
aaaattgatcaggtgccaatcgtagacgtgatgttgaatgactttggtgatccaaaccag
aaatttggctttgtagttggtcctgtctgcttccttggttaa
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