Acipenser ruthenus (sterlet): 117417674
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Entry
117417674 CDS
T07327
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117417674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arut03021
]
117417674
03036 Chromosome and associated proteins [BR:
arut03036
]
117417674
Transcription machinery [BR:
arut03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117417674
Coactivators
SAGA/TFTC/STAGA complex
117417674
Chromosome and associated proteins [BR:
arut03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
117417674
STAGA complex
117417674
TFTC complex
117417674
SAGA complex
117417674
SLIK complex
117417674
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
TFIID_NTD2
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
EIF3I
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT122_1st
NBCH_WD40
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_TEP1_C
Beta-prop_SCAP
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_IFT140_1st
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_Nup120_160
WD_LRWD1
VPS8_N
CDK5RAP3
RAB3GAP2_N
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
117417674
NCBI-ProteinID:
XP_033885751
LinkDB
All DBs
Position
13:complement(2682365..2688195)
Genome browser
AA seq
757 aa
AA seq
DB search
MAAVQDGPIELEPENEIKTETSNEVLGNPGDASGGVPPTAPVAAVATEKPAAAAADSTER
QTLLAVLQFLKKSKLFESEEILRREAGLLNEIGDSQGSGVGGAGLGGGGGAEPESGDASS
LLSRVAGAAATASANATPAPAKVTPVVTGGEDQPDVNVVLAAYSQQGDPVLYPVYYSGLK
RFIDSVLDCHRAELSQVFYPLFVHMYLELVYNQYEKEAKAFFEKFHGDQECYYKDDLRIL
SGLTKKEHMKGNETLLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIF
DGMPRSKGQIDSMSGSLAGEAKREANKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKK
KKPKKDSTGSKSKKQDPNAPQQSRIPLPELKDSDKLDKIMNMKEATKRVRLGPESLPSIC
FYTFLNAYQGLTAVDFTDDSSLVAGGFADSTVRVWSVTPKKLRGVKTAGDLSLIDKDSDD
VLERIMDEKTASESKNLYGHSGPVYGISFSPDRNYLLSCSEDATVRLWSLQTFTCLVGYK
GHNYPVWDTQFSPYGYYFISGGHDRVARLWATDHYQPLRIFSGHLADITCTRFHPNSNYV
ATGSADRTIRLWDILTGNCVRIFTGHKGPIHSLAFSPNGKFLASGATDGRVLLWDIGHGL
MIGELKGHTDTVYALKFSRDGEILASGSMDNTVRLWDALKAFDDIETDDFTAATGHITLP
ENSQELLLGSYMTKSTPVIHLHFTRRNLLLGAGAYNP
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaagatgggccgatcgagctggagccagagaatgaaatcaaaacagaa
acttcgaatgaggttctagggaaccctggcgacgccagcggaggggtccccccaacagcg
ccggtggctgcagtggctacagagaagccagccgctgcagccgcagactcgacagagcgc
cagaccctgctggctgtgctgcagttcctcaagaagagcaaactgttcgagtctgaggag
attctgcggcgtgaggcagggttactcaatgaaatcggcgactcgcagggctctggggtc
gggggagcaggcttggggggcgggggaggtgcagaaccagaaagcggggatgcctcttcg
ctcctcagccgagtggcgggggctgctgctactgctagcgcgaatgcaaccccagcgcct
gcaaaggtgacaccggtagtcaccggaggggaagaccagccagatgtaaatgtagtgttg
gcagcctacagccagcagggggacccggtcctgtacccggtttattacagcgggctgaag
aggttcatagattcggtgctggactgtcaccgagcagagctctcccaggtcttctacccg
ctcttcgttcacatgtacctggagctggtctacaaccaatacgagaaggaggccaaggcg
ttttttgagaaattccatggagatcaggaatgttattacaaggacgatttacgcattctt
tccggactgaccaagaaggagcacatgaaggggaacgagaccctgctggatttccggacc
agcaagttcgtgctgcggatctcccgcgactcctaccagctgctgaagaggcacctccag
gagcgacagaacaaccagatctggaacatcatccaggagcacctctacatagacatcttc
gatgggatgcctcgcagcaagggccagatcgacagcatgtctgggagtctggctggggag
gcgaagcgggaggctaacaaagctaaggttttctatgggttgctgaaggaaccggaaatc
gaggtgcccctggatgatgaagatgaagaggctgaaaatgaggaaggaaaacccaaaaag
aagaagcccaaaaaggacagcacaggatcaaagagcaaaaaacaggaccctaacgctccg
caacaaagcagaattcctcttccggagctgaaagattcagacaagctggataaaataatg
aatatgaaagaagccaccaaacgggtgcgtctgggtccagagagcttgccatctatttgc
ttctacacctttctcaatgcctaccagggtttaaccgcagttgattttacggatgattcc
agtctggtggctggaggttttgcagattcgacagtgcgagtgtggagtgtcaccccgaag
aaactgcggggcgtgaaaactgcaggggatctgagcctgattgataaagattctgacgat
gtgctggagaggattatggatgaaaaaactgccagcgagtccaagaacttgtatgggcac
agtggaccagtctatgggatcagcttcagtccagacaggaactaccttttgtcatgttca
gaggatgccacagttaggctttggagtcttcagaccttcacgtgtctagtggggtacaaa
ggacacaactaccctgtgtgggacacccagttctccccctatggttactatttcatatca
ggaggacacgacagagttgctcgtctctgggcaacagatcactaccagcctttacggatt
ttttctggccaccttgctgatatcacctgcacccgattccaccccaactccaactacgta
gccacaggctcggctgacaggaccatccgactctgggacatattgaccggaaactgcgtc
cgtatcttcacagggcacaagggcccaatccactctctggcattctctccaaatggaaaa
tttctggcatccggagcaacagatggacgagtcctgctctgggatattggacatggattg
atgatcggtgaactcaaaggacacacggacactgtctatgcgcttaaattcagcagagat
ggagagattctggcatcaggctccatggataacactgttcgactatgggacgcattaaaa
gcttttgacgatatagagacagatgatttcactgcagcaactgggcacattactcttcca
gaaaactctcaggagctgttactggggtcatacatgaccaaatccactccagtcatacac
cttcatttcacacgcagaaacttgctgcttggtgcaggggcatataacccctag
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