Acipenser ruthenus (sterlet): 117418012
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Entry
117418012 CDS
T07327
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 4
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117418012
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arut03021
]
117418012
03019 Messenger RNA biogenesis [BR:
arut03019
]
117418012
Transcription machinery [BR:
arut03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117418012
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
117418012
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_3
zf-CCHC
zf-CCCH_2
zf-CCCH_4
Nab2-like_zf-CCCH_
zf-CCHC_3
zf-C3H1
Motif
Other DBs
NCBI-GeneID:
117418012
NCBI-ProteinID:
XP_033886401
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Position
13:complement(34871263..34875954)
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AA seq
279 aa
AA seq
DB search
MQDLLATVDHIKFDLEVAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACIKGGMCPFRHI
SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMTKMPECYFYSKFGECSNKECPFLHIDPESK
IKDCPWYDRGFCKHGPLCRHRHSRRYICVNYLVGFCPEGPSCKHVHPRFELPMGTTEQPP
LPQQPAMQQKARNLQNFQQQNVTPMIQRSSSSLIQLTSTNVTSNQQRMPQGFGAMQYHGN
STGSRGPRPLEQVTCYKCGEKGHYANRCTKGHLAFLSGQ
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacctgcttgctactgttgatcatattaaattcgatctggaggttgctgtggag
cagcagctgggagcacagcccctgccgtttcctggcatggacaaatctggtgccgctgtg
tgtgaattcttcctcaaagcggcatgtataaaaggaggcatgtgtccgttccgacacatc
agtggagagaagacggtggtgtgtaagcactggctgagggggctgtgtaagaaaggagac
cagtgtgagtttctacatgagtatgatatgaccaagatgccagagtgttacttctactcc
aagtttggagagtgcagtaataaggagtgtccgttcttgcacattgaccccgagtcaaaa
atcaaagactgcccgtggtacgaccgaggattctgtaaacatggtcccctgtgcagacac
aggcactctcgaagatatatctgcgtcaattacctggtcgggttctgtcctgaagggccc
tcctgtaaacatgtgcatcctcgctttgagttgccaatgggaacaacagaacaaccgccg
ttacctcagcaaccggcgatgcagcagaaagcacggaaccttcagaattttcagcagcaa
aacgttactccaatgattcagaggtcatcgtcctccctgattcagctcacaagcaccaac
gtcacctccaaccagcagaggatgccgcaggggtttggagccatgcaataccatggcaac
agcacaggaagcagagggcccagacccctggagcaggtcacctgttacaagtgcggtgag
aaggggcactacgcaaaccgatgtaccaaaggacacctggcgtttctgagtgggcagtaa
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