Acipenser ruthenus (sterlet): 117418297
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Entry
117418297 CDS
T07327
Name
(RefSeq) exosome complex component CSL4-like
KO
K07573
exosome complex component CSL4
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117418297
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117418297
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117418297
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
117418297
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
Motif
Other DBs
NCBI-GeneID:
117418297
NCBI-ProteinID:
XP_033887092
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All DBs
Position
13:8720809..8724785
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AA seq
216 aa
AA seq
DB search
MMMHVDSFVAANQSTVWSSEKKMSPMKLCVPGERLCSIEDCIAGVGTYSRHGYILASLAG
YVLKKNEGEELPVISVVRETEAQLLPDVGAIVTCKVTSINPRFAKVHILYVGSTPLKDKF
RGTIRKEDVRATEKDKVEIYKSFRPGDIVLAKVISLGDVQSNYLLTTAENELGVVVAHSE
AGAQMVPISWCEMQCPRTHAKEFRKVARVQPEYLQA
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgcatgttgattcctttgttgcagccaatcagagcacggtttggtcttctgaa
aaaaagatgtctcctatgaagttatgtgttccaggggagagactgtgcagcatcgaggac
tgcattgctggggttggaacttactcgcggcacggctatatcttggcttccctcgctggc
tatgtgctgaagaaaaatgagggagaagagctgccagtgatctctgttgtgagagagacg
gaagctcagctcctgcctgatgttggtgccatagtaacttgcaaggtgaccagtataaac
ccaaggtttgctaaggttcacatcctttatgtggggtcaacccccctaaaagacaaattc
agaggaacgataagaaaagaagatgtcagagcaacagaaaaagataaggtggagatctac
aaaagtttcagacctggagacattgttctagcaaaagtgatctccctgggtgatgtccag
tccaactacctcctgacgacagcagagaatgagctgggggtggtggtggcgcacagtgag
gcaggggcacagatggtgcccatcagctggtgtgagatgcagtgccccaggactcatgcc
aaggagttccggaaggtggcaagagtgcagccagagtaccttcaggcatga
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