Acipenser ruthenus (sterlet): 117419485
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Entry
117419485 CDS
T07327
Name
(RefSeq) PDZ domain-containing RING finger protein 4-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
arut04121
]
117419485
Enzymes [BR:
arut01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117419485
Ubiquitin system [BR:
arut04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
117419485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
Sina_ZnF
zf-RING_UBOX
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_5
zf-TRAF
zf-rbx1
zf_C2HC_14
TRAF3_RING
zf-RING_6
IBR_1
PDZ_Tricorn
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
117419485
NCBI-ProteinID:
XP_033888150
LinkDB
All DBs
Position
14:27527525..27650595
Genome browser
AA seq
1055 aa
AA seq
DB search
MGFDLDRFAEDVDSDLKCKLCAKVLEEPLSTPCGHVFCAGCLLPWAVQQRLCPLQCQSIS
AKELHQVLPLKNLIQKLDTRCDYHARGCAKTVKLQELRDHVEMCDYSPAQCRNKGCKEVL
NLRDMDSHMRESCDYRPVGICQKGCGLVLLHKDLIQGNHCCLRALRAQNGALQVKMSSLE
QDTKKQTVKWSKREKSLLAQVSALQNEVQLTALRYQKKFNQYMIHINNITKYVASHCKGG
EQKTLNIVLHRESDSLGFNIIGGRPCQNQEDSTAEGIYISKILKNGSADRADGLQVHDRI
VEVNGRDLLKATHEEAVEAFRRAKEPIVVQVLRRTPITKNHGTSQEIHLVDVCTQTDITF
EHIMALSKLRPSTPPVPDICPFLLSDSCHSLHPMEHEYYEGNEFLSSMPADADRTEEFEY
EEVELCRVNSQEKLGLTLCYRTDDDEDMSIYVSEVGPNSIAARDGRIKEGDRILQINGHD
VQNREEAVALLSSEDCRNIVLLVARPEIQLDEGWLDDERNEFLEELKMEMLEEQHHEAMQ
YTASELEQPKKSEEDGGTTDTATTSSNTQEKDSGVGRTDDSVRNDESSEQENLGDSQKQV
SLQDKRELGQSQDTLVSNEMPCNESCVSGEYIDSDCTAAQDEDCERFRQLLKLKCKIRNS
GEYDLYYSRSSTIECNLKEPNGVERELQLLNEELRNIELECQNIMQAHKRQNARDQYADV
WSIEEEGYRDYNTSDDLQRAKLADIIEHPEKSDKDSSSAYNTAESCRSTPLTVGHSPDNS
LQRMINITNKKNLRSTIAANQMTARQDSKEACLAKTKSSDSSAEQQDNAPESNKLTEHER
SSIPQIPYLSPCHSSQYRHTNIPTHARHYQSYMHLIQQKSAVEYAQSQLSLVSMCKDLQK
FAEPKMEWKVKVRSDGTRYITKRPVRDKILKERALKIKEERSGMTTDDDTMSEMKMGRYW
SKEERKQHLMRAKEQRRRREFMMRSRLECLKESPQSGSEGKKEINIIELSHKKMMKKRNK
KILDNWMTIQELMTHGAKSPEDPQVHNAFLSVTTV
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggggtttgacttggatcggtttgcagaagacgtggactctgacttaaaatgcaaactg
tgcgcaaaagttctggaggagccgctgtccaccccgtgcggacacgttttctgtgctggc
tgtttgctaccttgggcggtacagcagagactctgcccgctgcagtgtcagtccatctct
gctaaggaacttcaccaggtccttccactgaaaaatctcatccagaagctggacaccaga
tgtgattatcatgccaggggctgtgcaaagacagtcaaactgcaggaattgagagatcat
gtagaaatgtgtgattacagtccagcccagtgcaggaataagggctgcaaagaggtgctc
aatttaagagacatggactctcacatgagggagagctgcgattacagacccgtaggaatc
tgtcagaaagggtgcggattggtactgctccataaggacctgatccagggaaatcactgc
tgcctccgggcactgagagcccagaatggggcgctacaggtaaaaatgtccagcttggag
caagacacgaagaagcagactgtcaaatggagcaaacgagaaaaatcgttgctggctcag
gtatcagcacttcaaaatgaagtgcaactcactgctctgaggtaccagaagaaatttaac
cagtacatgatccacatcaacaacattactaaatatgttgcaagccactgcaagggagga
gaacaaaaaacacttaatatagttcttcacagagaaagtgacagtctgggattcaacatc
attggaggaagaccgtgccagaatcaagaagattctactgccgaaggaatttatatttca
aaaatcttgaaaaatggctcagcggacagagcagatggacttcaagttcacgacaggatt
gtggaggtcaatgggagggatctgttgaaggccacgcatgaggaagcagtagaagccttt
cgcagagccaaggaaccaattgtagttcaagttttaagaagaactcccatcacaaagaat
catgggacatctcaggaaatccatctggtggatgtttgcactcagacagacattactttt
gaacacattatggctctctccaagttaaggccatcaactcctcccgtacctgacatctgc
cctttcctgctctctgacagttgtcactcactacatccaatggagcatgaatattatgaa
ggaaacgagtttctctcgagcatgcctgctgatgcagaccggacagaggagtttgagtat
gaggaagttgaactgtgtcgtgtcaacagccaggaaaagcttggacttaccttgtgctat
aggactgatgatgatgaggatatgagcatctatgtcagtgaggttggcccaaacagcatt
gctgccagagatggtcgtatcaaagaaggggatcgaattttacagataaatggtcatgac
gtccagaatcgcgaggaagcagtggcattactctcaagtgaagactgccgaaatattgtg
ctgctggttgccagaccagaaatacagctggacgaaggctggctggatgatgagagaaat
gaattcttagaagagctgaaaatggagatgttggaggaacaacaccacgaagcaatgcag
tatacagccagtgagctggagcagccaaagaaaagtgaggaagatggtggaacgacagac
acggccaccacctcatccaacacccaggagaaggacagcggggtgggccgcaccgatgac
agtgtgcgcaacgatgagagctctgagcaggagaacctgggggacagccaaaagcaagtt
tcgctgcaggacaaacgagagctgggccagagtcaggacacgctggtgagcaatgagatg
ccgtgtaacgagagctgtgtgtctggtgaatatatcgactcggactgcactgcagcccag
gacgaggactgcgagaggttccgccagctgctgaagctcaaatgcaagataagaaacagc
ggcgagtatgacctttactacagccgcagcagtaccatcgaatgcaacctcaaggaacca
aatggggtagaacgggagctacagctgctcaacgaagagctccgtaacattgagctggag
tgccagaatatcatgcaggctcacaagcgtcaaaatgcaagggatcaatatgctgatgtc
tggtcaatcgaagaggaaggctatcgagattataacaccagtgatgacttgcagagagct
aagctagcggatatcatagagcatccagaaaaatcggacaaggacagctccagtgcgtac
aacacagcagagagctgtcgcagtacgccactgacagtgggccactcaccagataactct
ttgcagcgaatgatcaacattacgaacaagaagaatctgaggagtaccattgcagcaaac
caaatgactgccagacaagacagcaaagaggcatgtctggctaaaactaaaagttcagac
agttcagcagagcagcaggataatgcgcctgaaagcaataaacttactgagcatgagagg
tccagtattccacagattccatatctttcaccatgccacagttcccagtacagacatacc
aatatacccactcacgccaggcactaccagagctacatgcatctcatccagcagaagtct
gccgtggagtacgcccagagccagcttagccttgtgagcatgtgcaaagacttgcagaag
tttgcagagcctaaaatggagtggaaggtcaaagtccgtagtgacgggacgagatacatc
acaaagaggccagtgagggacaaaattctgaaagagcgtgccttgaagatcaaagaggag
cgcagcggaatgacgacagatgacgacacaatgagcgagatgaagatgggcaggtactgg
agcaaggaggagaggaagcagcacttgatgagggccaaagagcagaggagacggcgggag
ttcatgatgcgcagcagactggaatgcctcaaggaaagccctcaaagtggcagcgaaggg
aaaaaggaaataaacattattgaactgagccacaaaaagatgatgaaaaagcgaaataag
aaaatcttggacaattggatgacaatccaagaactgatgacccatggggccaagtctccc
gaggacccacaagtacacaatgccttcttgtctgttactactgtataa
DBGET
integrated database retrieval system
