Acipenser ruthenus (sterlet): 117419922
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Entry
117419922 CDS
T07327
Name
(RefSeq) tRNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
arut03016
]
117419922
Enzymes [BR:
arut01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
117419922
Transfer RNA biogenesis [BR:
arut03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117419922
Prokaryotic type
tRNA splicing ligases
117419922
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
117419922
NCBI-ProteinID:
XP_033889205
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All DBs
Position
14:complement(5287647..5307100)
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AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKISKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGFG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMDNPDAVVSPGGVGFDI
NCGVRLLRTNLDEGDVQPVKEQLAQSMFDHIPVGVGSKGVIPMGVKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPSKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYND
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARITS
QEGQDYLKGMAAAGNYAWVNRTSMTFLTRQAFAKVFTTTPDDLDMHVIYDVSHNIAKVEE
HVVDGKQRTLLIHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRAMSRSKSRRNLDFQDVLDSLADKGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHDAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgaagctacaatgacgagttgcaatatcttgataaaatcagtaaaaactgctgg
cgcatcaaaaaagggtttgtcccgaacatgcaggtggaaggggttttctatgtgaacgac
ccgctggagaagctgatgtttgaggagctcaggaacgcctgtcgagggggaggttttggt
ggctttcttcctgctatgaaacagattggcaatgtggctgcattacctggaattgttcat
aggtccattggtctgccggatgtgcactctggttatgggtttgccattggaaacatggct
gcctttgacatggacaaccctgatgctgtggtctcaccaggtggggtggggttcgatatt
aactgtggagtccgactgctgcgcacaaacctggacgaaggcgatgtccagccggtcaag
gaacagctcgctcagtccatgtttgaccatattccagtgggagtgggatccaagggcgtc
atccccatgggcgtcaaggatctggaggaagctctggagatgggggtggactggtccctg
cgggagggctatgcctgggcggaggataaggagcactgcgaggagtacggcaggatgctg
caggccgatcccagcaaggtctcctccaaggccaagaagagggggctcccgcagctggga
acccttggcgctgggaatcactatgctgaaatccaggtggtggatgagatttacaacgac
tacgctgccaagaagatgggcatcgatcacaagggccaggtgtgcgtcatgatccacagc
ggcagcagggggcttgggcaccaggtggccacagacgccctggttgcgatggagaaggcg
atgaagagagacaagatcatagtgaacgaccggcagctggcctgtgcgcggattacctcc
caggaggggcaggactacctgaagggcatggctgcagccgggaactacgcctgggtcaac
cgcacctccatgaccttcctaaccagacaggccttcgccaaagtgttcaccacgacccct
gatgacctggacatgcacgtgatctacgacgtgtcccacaacatcgccaaggtggaggag
cacgtggtcgacgggaagcagcgaactctgttgatccacaggaaggggtccacgagggcc
ttccccccccaccaccctctcatcgccgtcgactaccagctgaccgggcagcctgtcctg
attggaggcaccatggggacgtgcagctacgttctgaccggtaccgagcagggcatgacc
gagacctttggaaccacctgccacggagctggtcgagcgatgtcccgttcgaaatcgcga
cgcaacctcgatttccaggatgttttggacagccttgcagacaagggtattgcgatccgt
gtcgcatcccccaaacttgtcatggaagaggctcccgaatcctacaaaaatgtaacggat
gttgtgaacacttgccatgacgcagggatcagcaaaaaagcaatcaaactgcggcctatt
gcagtcatcaagggttaa
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