Acipenser ruthenus (sterlet): 117420697
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Entry
117420697 CDS
T07327
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117420697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
arut03041
]
117420697
03009 Ribosome biogenesis [BR:
arut03009
]
117420697
Enzymes [BR:
arut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117420697
Spliceosome [BR:
arut03041
]
Complex A
U2 snRNP components
U2 related factors
117420697
Complex B
117420697
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
117420697
Ribosome biogenesis [BR:
arut03009
]
Eukaryotic type
90S particles
Helicases
117420697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
Flavi_DEAD
AAA_25
AAA_29
AAA_7
Motif
Other DBs
NCBI-GeneID:
117420697
NCBI-ProteinID:
XP_033890121
LinkDB
All DBs
Position
1:complement(20824651..20879411)
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AA seq
757 aa
AA seq
DB search
MSKRHRLDLGDDYSSSKKRTSSDGKDRDRERDERSRDRDRDRDRDREKDMKPPGISLNPV
VPCGLPALKQAAIHQQINPFTNLPHTPRFYEILKKRLQLPVWEYKERFNDILTKHQSFVL
VGETGSGKTTQIPQWCVDMVRSLPGPKRGVACTQPRRVAAMSVAQRVADEMDVMLGQEVG
YSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKE
VVRQRSDLKVIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRT
VIQIHMCEEEEGDVLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKIIPLYSTLPPQQQQ
RIFEPPPPKKGSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLV
TAISKASAQQRAGRAGRTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLG
IDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIAS
CEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYHAFKQNH
ESVQWCYDNFVNYRSLMSADNVRQQLSRIMDRFNLPRRSTEFTSRDYYINIRRALVTGFF
MQIAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDVKPEWL
VKIAPQYYEMSNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaacggcaccggttagatctgggagacgattattcgtctagtaagaaacggaca
tcttctgatggaaaagatagagatcgggaacgtgatgaacgatccagggacagggacaga
gacagagatcgcgatagagaaaaggacatgaaaccacctggtatctctctcaatcctgtt
gtgccctgtggtttgccagctttaaaacaagcagcaattcatcagcagattaatccattt
accaatttgccgcacactccaagattctatgagatcctgaagaagaggcttcaacttcct
gtatgggaatacaaggaaagatttaacgatattctcacaaaacatcaaagctttgtattg
gtcggtgagactggttctggcaaaacaacacagattcctcagtggtgtgttgatatggtg
cgctcacttcctggacccaagcgtggtgtggcctgtacacagcccagaagagtggctgcc
atgagtgtagcccaaagagtggcagatgaaatggatgtcatgttgggacaagaagttgga
tattccattcgatttgaagactgcagcagtgcaaagactatcttgaagtatatgactgat
ggtatgttacttagagaggcgatgaatgatccacttctggaacgttatggtgttatcatc
cttgacgaagcccacgagcgaacactagccacagacattttaatgggagtcttgaaagaa
gtggttagacaaagatcggatttaaaggttattgtcatgagcgccacgttggatgctggg
aaattccaggtctactttgataattgtccgctgttaacaattcctggtcgcacacaccct
gtggagatattttataccccagaaccagaaagagactacttggaagcagctatccgaaca
gtaatacaaatccacatgtgtgaagaggaggaaggagacgtgttgctgttccttacaggt
caagaggaaattgatgaagcctgtaaacggataaaaagagaaatagacgacttgggacct
gaagttggagacattaaaatcattcctctgtattccaccctaccacctcagcagcagcaa
aggatctttgaacctccccctccaaaaaaaggaagtggagcaataggcagaaaggttgtt
gtttcaacaaatattgctgaaacatccctgactattgatggtgtagtgtttgtaattgac
cctggatttgctaaacaaaaggtgtacaatcctcgaatcagagtggagtccttgctggtg
actgctataagcaaggcttctgctcagcagagagcaggtcgtgctggcagaacccggccg
gggaaatgtttccggctgtatacagaaaaggcctacaaaactgaaatgcaggacaacaca
taccctgagattttgaggtccaatttgggctctgttgtgttgcaactaaagaaacttggt
atagatgacttggtgcattttgatttcatggacccgccagctcctgaaactctgatgaga
gccctggaactattgaattatcttgctgccctgaatgatgatggtgatctgactgagttg
ggatccatgatggcagagtttccattggatccacagctagccaagatggttatcgccagc
tgtgaatttaattgttccaatgagatcctctcaattacagcaatgttgtcagtcccacag
tgttttgttcgtccgacggaggcaaagaaagctgctgatgagtccaagatgaggtttgca
cacatagatggagatcacttgacgctactaaatgtctaccacgctttcaaacagaaccat
gagtcagttcaatggtgctatgataatttcgttaactacagatcactgatgtctgctgac
aatgtacgtcagcagctctccagaataatggacagattcaatctgcctcgtagaagcaca
gagttcaccagtcgagattactatatcaacatacgaagggccttggtcactggcttcttc
atgcagattgcgcatttggaaaggacagggcattacctgactgtgaaagataaccaggtg
gtacagttgcatccctccactgttcttgaccacaaacctgaatgggtcctctataacgaa
tttgtactcacaacgaagaactacattcgaacatgcacagatgtaaaaccagagtggttg
gtaaaaattgccccccagtactatgaaatgagcaacttccctcagtgcgaagcaaaaaga
cagctggagcgcatcgttgccaaacttcaaaccaaggaatattcacagtactga
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