Acipenser ruthenus (sterlet): 117420865
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Entry
117420865 CDS
T07327
Symbol
vps13a
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 13A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
arut04131
]
117420865 (vps13a)
Membrane trafficking [BR:
arut04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
117420865 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
Motif
Other DBs
NCBI-GeneID:
117420865
NCBI-ProteinID:
XP_033890468
LinkDB
All DBs
Position
1:79298682..79404726
Genome browser
AA seq
3188 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDSSQLKLGIWGGDAVLRNLDIKENALSQLDIPFKVRSG
HIEKLELKIPWKNLYNQSVEATLAGVYLLIVPTASIKYDAEKEEKQLQEARQKELQRIEE
TKLKAEEREKPKEEKQDTFIEKLITQVIKNLQVKISNIHIRYEDDITNPKSPLSFGVSLQ
NLSLQTADRNWNPCLPDETSKLFFKLVRLDNLFAYWNVNSELYSNDCSEEALGNLKNGVA
MHNLIPEGYDFIFRPISAKAKLRMNPRSDVDFSSPKMDLDVNLQEVAIELNRPQYLSILE
LLGSVDMMSRNLPYRKFRPEVPVHSNAKLWWKYVTTCIFEVNVKPRHEMWSWKHIRRHRQ
KVRTYKELYKMKITTKKPSEELLKLLQEPEKTLDIFNITLARQQAEMEASKAGLKIYRPG
VKVEEEESGGWLGWMWSWSGEKQEDKETKSGGFDELMTPAEKAKLCKAIGYSETAVDPTL
PKDFEAMKLSFQLLSMSFSIKEDYGKPEIIKVSILDLSTMLTQRPGAQAVKLSAKISTFE
VTGLPQNLSTPILLTSRSVKVENKNPLLSLQFETNPLDGSADQRLRVEAQPLEIVYDAVT
VNSLSEFFMPPQDLQLEELTSATLMKLEEFRDRTSTGLMYVIETQKILDLKINLMASYII
VPQTGFYTSSENLLVLDLGHLKVTSKSRKGLPQLTVGQSCIEDIMSRAYDSFDVELSSLQ
LLYSKPEQDWKNARKSKQSSLHILEPVDLRVDFSRAMVVSDPRMPKFKIFGQLPLLSVRI
SDEKVRHVLALIDSIPLPKGPPAPSASNTQSTPQHPKYPVVMTPQLTPRNQSLPNLRSSI
VFESESEEEFYDAPSSPVEDLPFFEAQSNSLKRKRNPLKKQESVKNMTNFQLRFEISEVS
IQLCRLSENVELTVLHLYIEGLGTELNLRSFDMSSSTFLKEICLKCPEYLDSKDKPVYII
TTQDNSETDLLTLDYIKAEKNGPEFKTLYNNTEQLIKVNFSSLDVHLHIEALLNAMNFLN
NLIPPSEKDTSEESAPAVGEEKKEETTVAKKSTPKKSKFEDVIGLHVLADLSCLKIYLRR
QKGHISEISIEGLVSQVIMRKNATEILAKLKNIVILDCDEEALYKKAVSIAGKEVFSFKM
ISHVDATEGNAYTDMNIVDSCVTLTVGCIQVIFVNKFVSSILDFINHFQTAKEALTEATV
QAAGMAATGVMELAERSTRMALDIHVKAPVVVVPQSAVSKTVIVADFGLITVKNHFSIVQ
SKTHIKIPPVIDAMKVELSDLKLYRTTIENNTFQSEIQLLQPVNLGLVIERNLSAAWFNE
IPDIKIIGQLKPMNLVLSQEDLTVVLRTLNENIGDSSGAPAAPATVDKSDNVSTKGSQTS
EQNGGTTVITAAVVETQNITKLKTTLKLDFRFESLTLELYSPNGTQVQELESRDEQLKLA
EFKLGLISTAVTMLSDSSMKASVKLANCLLDDKRQRIQKATPRMVEMKPGLEKNWMVDIS
YRQGRDGTVLDTVVRDLILCASMEFLLTVADVFVKASQLSSAADQKKKLVTTATKEQAPL
KPVAKMEMNVVVKNPEIVFVADLTRADAPALVVTTQCEVCIKNDPETQQMTAAIKDLKVV
ACPFLREMRKNNITTVLQPCDVFFQSSQTSSTPQKIELVIKCLTLKVSPIIINTVITITS
ALSPAAETPQELESPVPLNLWDMKQVKDLKLWFLEEDNENKNSTVSPLVPQGESLKMTIE
SIFLTLEAGVGHRTVPMLLAKSAFSCDVKNWSTLINLQSLLNLEVHYYNEVMGVWEPLLE
PLDEETSDNFRPWTLGIKMKKKPVRYTAEFDEVDYNVPDYKTVINISSKDQLNITLSKCA
LVMLGNLGTAFAEAASQTSECFQKDQAPFVIKNCLGIPVVVSHSDTFSVIDLDLGKKDYE
LQDGECLSMDYQRTMSEKDQFVAMTSMSGKRYYIQPTPFDHTSANRIPLTKVGRGLYSVI
HKDSGVTRFIVCQIHTVEGSKVITIRSPFQIKNHFSIPFKVYEDEKLIGIASPQEEFCIP
LPFYRSVLSLQPVTEDNKVYEKSEVFTYELISDQSGECLQRKCHRSSDQSLIINVVPVKD
DLTCNSTEEKMDXPYIAHLWPTVLLRNLLPYPISYSLEENANLTAILKEGHSAQIHTAVL
DQSRLELCVLDYLNQNWKGQYHIRSNQPEIDFIQFTSLSEDDRTELDIAIHVTYNTGQTV
VAVHSPYWMVNKTGRLLQYKADDVHRKHPLDYEMPLLFSFKPKNFFQNNKVQLMVSDSEL
SDEFSLDTVGSYGDVKCKARNKDYLVGVKIDASSFSLTRIVTFIPFYMLVNRTNHQIEVS
EEDKDKWTVTDSNQSVPFWPEKGYAKLLIKVQGCQTPPQAIHFNRQENCNLLHLDYKFGG
IVVDVNLTEHSTIIRFSDYHEGSAPFLIINHTKETLEYHQSYAKEKDELQPSKAMYYTWV
DPTGSRLLSWTCGKHTGELSPVQDKFLEINSDDPKLYLASFYEGLQRVALFTEDESVYKL
LCESEKAELAEQEIILSLQNMGISLVNNCSNQEVSFIGITSSDVVWEAKPKHKSRWKPMR
VNQTDLLESAFREYIDSGPVDNLIVNLEPNFQVCLTPTATDMKMLLPHEAAIRRNFLPAV
KVEHNISARQKSYRVQIYRIQIQNQLPGAIFPFVFYPIKPPKSVTMDSEPKPLADVSIVT
RSAGHSDISRIKYFKVLIQEMGLKLDLGFLYALSELFTQDNASEASTEQKVQLFEKDIEY
LKMELNTVSTTDTSAIGLYEYFHISPIKLHLSLSLSTGGEDGNKERRQTEVIPVQSLNLL
LKSIGATLTDAQDVVFKLAFFELTYQFCTTQQLQWEVIRHYSKQAIKQMYVLVLGLDVLG
NPFGLIRGLSEGFEAFFYEPYQGAIQGPEEFAEGMALGVKALVGGAVGGLAGAASRITGA
MAKGIAAMTLDEEYQQKRREEMNTQPSGLREGITRGGKGLVSGFVSGITGIVTKPIKGAQ
KEGAAGFFKGVGKGLVGAVTRPTGGIIDMASSTFQGIKRATESSEGVESLRPPRFIHEDG
VIRPYREREGVGSQMLQKIENGRFAKYKYFAHAKVNETDFFMITKSGIFFVTKGTFGQLT
CEWQYCYDEFTKEPLVVEGRRLRIEAKERVKSVFHAKEFGKIINFKSPEIAKWVLAKLED
ARDILPKY
NT seq
9567 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtccgtggtggtagacgtgctaaacaggttcctaggagactacgtggtg
aacctggacagctcgcagctcaaacttgggatatggggaggtgatgcagtgcttagaaat
cttgatatcaaagaaaatgcattgagccaattggatattccatttaaagtaagatcagga
cacatagaaaagcttgaattgaagatcccttggaaaaatctgtacaatcagtctgtagaa
gctacattagccggagtgtaccttctcattgttcccactgccagtataaagtatgatgca
gaaaaggaagaaaagcaactacaagaagccagacaaaaagaactacagaggattgaagaa
accaagttgaaagctgaagaaagagaaaaacctaaagaagaaaaacaagacacctttatt
gaaaagttaatcactcaggtcattaaaaacctgcaggttaaaatttcaaatatccacatt
cgatatgaagatgacatcactaatcctaaaagcccgttgtcatttggtgtgtctcttcaa
aatctcagtcttcagactgcagatcgaaattggaacccatgtcttccagatgaaactagc
aagttgttctttaagcttgtacggctggataatctatttgcttactggaacgtaaattca
gaactctattctaatgactgctctgaggaagccctgggcaacttgaagaatggtgttgca
atgcacaacttgattccagagggttatgatttcatatttcgtccaatctctgccaaagcc
aaacttcgcatgaaccctcgttcagatgttgacttttcttctccaaaaatggacttggac
gtgaacctgcaagaggtcgccatagagcttaacagaccacaatacctcagcatcttggag
cttcttggatctgtagatatgatgtctcgaaatttgccatacagaaagttccgaccagaa
gttcctgtccactcaaatgcaaagctgtggtggaagtatgtcacaacatgcatttttgaa
gtgaatgttaaacctagacatgagatgtggtcatggaagcacattagaagacacagacaa
aaagtaaggacgtacaaagaattatataaaatgaagataacaaccaagaagccttctgag
gaacttcttaagcttctccaggaaccagaaaagacattggatatatttaatatcacacta
gcacgacagcaagcagaaatggaggcttcaaaggcaggtttaaaaatctacagaccaggg
gtgaaagttgaagaggaggaatcaggaggctggcttggatggatgtggagctggtcagga
gagaagcaggaggataaagaaaccaaatctggaggatttgatgaattgatgacccctgca
gagaaagcaaaattgtgtaaggccattggatacagtgaaactgctgttgatcccaccttg
ccaaaagattttgaagccatgaagctctccttccagctgttaagcatgtctttttcaatt
aaagaagactatggcaagccagaaattataaaagtttctattcttgatttaagtacaatg
ctgactcagagaccaggagcacaagcagtcaaactatctgctaaaataagcacatttgaa
gttactggactgccgcagaatctgtcaaccccaattctgctgacctcaagaagtgttaaa
gttgaaaataagaatcctctcctcagcctccagtttgaaacaaatcctcttgatggatct
gcagaccagaggttaagagttgaagcacagcctttggaaattgtgtatgatgcagtaact
gtgaacagtttatctgaatttttcatgcctccccaagatttgcagctggaagagttgact
tctgccactttgatgaagcttgaagaatttcgagacaggacatcaacaggattgatgtat
gttatagagacccaaaaaatcctggatctgaaaattaacctcatggcttcctacataatt
gttcctcagactggcttctatacttcctctgagaatctacttgtcctggaccttggtcat
ctcaaggtaaccagtaaaagtcgtaaaggtctgccacagttaacagtaggacagagctgc
attgaggatataatgtccagggcgtatgacagttttgatgtggagttgagcagtttgcag
ctgctctatagcaaaccagagcaagactggaagaatgctcgaaagtctaagcagtcctcc
ctacatatattggagcctgtggatttgagagtagactttagcagagctatggttgtaagt
gatccaagaatgccaaaattcaaaatttttggtcagttgcctttgctttctgttcgcatt
tcggatgaaaaggtcagacacgttctggcactgattgatagcattccattgccaaaaggc
ccgcctgccccatctgcctcaaatactcagagtactccacagcaccctaagtaccctgtt
gtcatgacaccacagttgaccccaaggaaccaatccttgcctaaccttagatcttctatt
gtgtttgagtcagaatcagaagaagaattttatgatgctccaagctctccagtggaagat
ttaccattttttgaagcacaaagcaattctttaaaaagaaaaagaaatcctttaaaaaag
caagagtctgtgaaaaacatgactaattttcaactgaggtttgaaataagtgaggtgtca
attcagttatgtcgtctttctgaaaatgttgaactgacagtgttacatctgtacattgag
ggactaggcacagagctgaacttgcgatcatttgatatgtcatccagtactttcctgaaa
gaaatctgcttgaaatgtccagaatacttggattcgaaagacaaaccagtttatatcatt
acaactcaggacaattcagagactgatcttcttaccttggattacattaaggcggagaag
aatgggccagaattcaaaacgctttataacaatacagaacagcttataaaggtaaacttt
agctccctggatgtccacttacatatagaagcactattgaatgccatgaactttttaaat
aacctcatcccaccgtcggaaaaagacacatctgaagaatctgcccctgcagtcggagag
gagaaaaaagaagagacgactgtagccaagaaatcaactcccaagaagtctaaatttgaa
gatgttatcggcctacatgtccttgcagacttgtcatgcctgaaaatataccttcgaaga
cagaagggacacatttcagagataagcattgaaggtcttgtctcccaagtaatcatgaga
aagaatgcaaccgaaatactggcaaaattgaagaacattgttattttagattgtgatgag
gaagctctttataaaaaggctgtatctattgctgggaaagaggtcttcagttttaaaatg
atctctcatgttgatgccacagaaggcaatgcctacacagatatgaatattgttgacagt
tgtgttacccttactgttggttgcattcaagtcatctttgtaaacaagtttgtctcttcg
atactggactttataaatcatttccaaactgctaaggaggctttaacagaggccactgtt
caagcagcaggaatggctgccacaggcgtcatggaacttgctgaacggagtacccgaatg
gcacttgacattcatgtgaaggccccagttgttgttgtaccacagtctgccgtgtcaaag
actgtgattgtggctgattttggtctcatcaccgttaagaatcacttctcaattgttcaa
tcaaaaactcacattaagattcctccagtcattgatgccatgaaagttgaactcagtgac
cttaaattatatcgaacaaccatagagaataacacgttccagtctgaaattcagttactg
cagcctgtaaacctaggtttggtaattgaacgtaatttatctgcagcctggttcaacgaa
atcccagacattaaaataattgggcaactcaaaccaatgaatcttgtactcagccaggaa
gacctgactgttgtgttaaggactttaaatgaaaatataggagatagttcaggtgcacct
gctgctcctgccacagtggataaatcagacaatgtttctacaaagggttcccagacatct
gaacagaatggaggaacgactgtgatcacagctgctgttgtggaaacacaaaacattaca
aagctaaaaacaactctgaaacttgatttccggtttgaatcattgactttggagttgtac
agcccaaatggaacacaggttcaggagctggaatcaagagatgagcagttaaaacttgca
gaattcaagttgggattgatttcaactgctgtcacaatgttatcagatagctccatgaaa
gcctcagtcaaacttgcaaactgtttgctggatgataaacgtcaaagaatacagaaagct
actccaagaatggtggaaatgaaaccaggcttggaaaaaaattggatggtggacatcagc
tacagacaaggaagggacggcactgtccttgatacagtcgtccgtgacctaatcctttgc
gctagcatggagttcttgctaactgtagcagatgtctttgtcaaggccagtcaacttagt
tctgcagcagatcagaaaaagaagcttgtgacaacagcaacaaaagagcaagctccctta
aaaccagtggccaaaatggaaatgaatgtggttgtgaaaaatccagagatagtttttgta
gcagatttaaccagagcagatgccccggcactagtggttacaactcagtgtgaagtctgc
attaaaaatgacccagaaactcaacagatgactgctgccattaaggatctcaaggttgtt
gcatgcccattcctgagagaaatgaggaaaaataacatcactacggttctccagccttgt
gatgtgtttttccaaagttcacagacctcttcaactccacagaaaatagaacttgtcata
aagtgccttacactaaaggtttcaccaattatcatcaacacagtaataacaattacgtca
gcactatctcctgctgcagagactccacaagagctggaaagtccagtcccacttaatctg
tgggatatgaaacaagttaaggatttaaaactttggttcctggaggaggacaatgaaaat
aaaaacagcactgtctctccactggttccacaaggagaatccctgaaaatgacaattgaa
tcaatattccttacactggaggccggtgttggacacagaactgttcccatgcttcttgca
aagtctgctttttcatgcgatgttaaaaactggagcactctcattaacctccagagtctt
cttaatttagaggtacactattacaatgaggttatgggtgtttgggaacctcttctggaa
cctttggatgaagaaaccagtgataatttcaggccgtggaccttaggaataaagatgaaa
aagaagcctgtaaggtacactgcagagttcgatgaagtggactacaatgtccctgattac
aagactgttatcaacatctcttcaaaagatcagctcaatataactctgtcaaagtgtgca
ttggtaatgcttggcaatctaggcacggcatttgctgaagcagctagtcaaacctcagaa
tgtttccagaaagaccaagccccttttgtgatcaagaattgcttggggattccagtggtg
gtttctcacagtgatacattcagtgtaattgatttggatttaggaaagaaagattatgag
ctgcaggatggagagtgtctaagtatggattaccagagaacgatgagtgagaaggaccag
tttgtggccatgaccagcatgagtggcaagagatattacatacagcctactccatttgac
catacttccgctaatcgaattccactgacgaaagtgggccgtggtttatatagtgtcata
cacaaggattccggagtaacaaggttcattgtttgtcagattcacacagtggaagggagc
aaggtgataacgatacgctctccttttcagattaagaatcatttctcaataccattcaag
gtttatgaagatgaaaagcttattggaatagcttcgccccaggaagaattctgcatccct
ttacctttctacagatcagttcttagcttgcagccagtaactgaagacaacaaagtctat
gagaaatctgaagtatttacctatgaactaatctcggatcaatctggagaatgcctacag
cggaaatgtcatagatccagtgaccaatccctgattatcaatgtagtaccagttaaagat
gatttaacgtgcaacagcacagaagaaaaaatggatncaccctatattgctcatttgtgg
cctactgttcttctacgaaacttgttgccttatcctatcagctattctctagaggagaat
gcaaacctcactgccattctgaaggaaggacattctgctcagattcacacggctgtacta
gaccagtccagactggagttatgtgtactagactaccttaaccaaaactggaagggacag
taccacattagaagcaaccagccagaaattgacttcattcagtttacgtctctcagtgag
gatgacaggacagagctagatattgcgatccatgtgacatacaacactggccagacagtt
gtggcagtgcattccccatactggatggtaaataaaacaggacggttactccagtacaaa
gctgatgatgttcatcgtaagcaccctctagattacgagatgccactccttttttctttt
aaaccaaagaatttttttcagaacaacaaggtgcaacttatggtgtcagatagtgaactt
tcagatgaattctcccttgatactgttggcagctatggtgatgtaaaatgcaaagcccgg
aataaagattatctggttggtgtgaaaatagacgccagcagctttagtctgacgagaatt
gttacattcattccattttacatgctggtcaacagaacaaatcatcagattgaagtgtca
gaagaagacaaagacaaatggacagttactgattcaaatcaatctgttcccttttggccc
gagaaaggttatgcaaaactcttaatcaaagttcaaggttgtcagacaccaccacaagca
atacacttcaacaggcaagaaaattgtaatttgctgcatttggactacaagtttggaggt
attgttgtggatgtcaacctgactgaacattcaacaataatcagattctctgattaccat
gaaggctcagctccattcttaattattaatcacaccaaagaaaccttggaatatcatcag
agctacgcaaaggaaaaagatgagctacagccaagtaaagcaatgtactacacatgggta
gacccaactggttcaagactgttaagctggacctgtggaaaacacacaggggaactgagc
cctgtacaggataaattcctggagatcaatagtgatgatccaaagttatacttggcatca
ttttacgaaggccttcagagggttgcattgtttactgaagatgagagcgtgtacaaactt
ttgtgtgaaagtgaaaaggcagagcttgcagaacaagaaatcatactatctttgcagaat
atgggaatctcattggttaataattgttccaatcaagaagtgtccttcattggaataaca
agttctgacgttgtatgggaagccaaaccaaagcacaagtctcgatggaaaccaatgcgt
gtcaatcagacagatttgttggagtcagcctttcgagaatatattgattctggtcctgtg
gataacctaattgtgaatcttgaaccaaactttcaggtgtgtctgacacctactgctact
gatatgaaaatgttgctcccccatgaagcagcaatcaggagaaatttcttaccagctgta
aaagtggaacacaacatctcagcacgtcagaaatcatacagagtacagatctacaggata
cagatacaaaaccagcttcctggagccatctttccctttgtgttttatcccataaaacct
ccaaagtctgtcacaatggattcagaacccaaaccgctggctgatgttagcattgtgacg
aggtctgcaggacattcagacatatcgcgtatcaagtactttaaggttctaattcaagag
atgggcttaaagttggacctgggattcttgtatgccttgtctgagctctttacacaagac
aatgctagtgaagcttcaactgaacaaaaggttcaactttttgaaaaggatattgaatat
cttaagatggagctgaacactgtatctaccacagatacctctgcaattggtctttatgaa
tatttccacatctctcctatcaagctgcatttaagtttatcgctaagtactggaggtgaa
gatggaaataaggaaagacgacagacagaagtcattcctgttcagtccctgaacctactg
ctcaagagtattggtgccactctaacagatgcacaagatgtagtgtttaaacttgctttc
ttcgagttgacctaccagttctgtacaactcagcaacttcagtgggaggtcatcaggcat
tactctaaacaggccatcaagcaaatgtatgtccttgttcttggactggatgtcttgggc
aacccatttggattaatcagaggcttgtctgaaggatttgaagctttcttctatgaaccc
tatcagggagccattcagggaccagaggagtttgcagaaggaatggcacttggtgtaaaa
gctctggttggaggtgctgttggtggcttagctggtgctgcttccagaatcactggtgcc
atggcaaaagggattgcagccatgaccttggatgaagagtaccaacaaaaacgtagagaa
gagatgaatacacagccaagtggtctaagggaaggcattactcggggaggcaaaggttta
gtgtcgggatttgtcagtggtattacaggaattgtaacaaaacctataaaaggtgcccaa
aaagagggagcagctggattctttaaaggagttggtaaaggattagtgggagcagtgaca
cggcctactggaggtatcatcgatatggccagcagcactttccagggtattaaaagggca
acagaatcctcagagggtgtggagagcctacgacctccccgctttattcatgaagacgga
gtcattagaccatacagggaaagagaaggtgttggcagccaaatgctacagaaaattgaa
aatggaaggtttgccaaatacaaatactttgcccatgccaaggtgaacgaaacagacttt
ttcatgatcacaaaaagtggcatattctttgttacaaaaggaacattcggacagcttact
tgtgaatggcaatactgttacgatgagttcaccaaagagccacttgtagttgaaggcaga
cgcttacgcattgaagcaaaggagagagtaaagtctgtgttccacgccaaagagtttggg
aagataataaacttcaaaagtcctgaaattgccaagtgggttcttgccaaattagaagat
gcaagagatatcctgccaaaatactga
DBGET
integrated database retrieval system
