Acipenser ruthenus (sterlet): 117421437
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Entry
117421437 CDS
T07327
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
arut00536
]
117421437
Glycosaminoglycan binding proteins [BR:
arut00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117421437
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
CdrL_M
Motif
Other DBs
NCBI-GeneID:
117421437
NCBI-ProteinID:
XP_033891765
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Position
1:48865042..49055260
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AA seq
735 aa
AA seq
DB search
MTAAGSKGDTRRAEDMESKAASDGQRRCSRTFPNVLSFILSLLCVSYCLLLSVRTSEFQD
RVFALETGKGELYYHRAPAFSVDQLNSMVQERVDELLAQRSYEHLAKIRIAREAPPECSC
PAGPPGKRGRRGRNGESGPPGPPGPKGDKGDQGDQGPRMVFPKINHGFLSADQQLIKRRL
IKGDQGQAGPPGPPGPPGPPGPRGPPGDTGKDGPRGVPGLPGEPGNSGEVGPMGPEGPPG
QKGSLGSPGIAGVDGQKGEPGLPGIDGTPGIKGEIGEWGEKGDSGEPGQKGDMGAKGESG
SSAAGIKGEPGETGRSAQKGEPGLPGLPGLPGIKGEPGFMGPQGEPGLPGLPGTKGERGD
SGPPGKGERGESGPHGPKGVPGEAGATGPKGSKGDSGETGKLGAMGPRGPPGQKGDQGAT
EIIDYNGNIHEALQRITTLTVTGPPGPPGLPGHQGIKGETGAQGNPGLDGEQGPKGSKGD
MGIPGMSGEKGEIGLPGLPGANGMKAEKGDSGLPGPQGQSLIGPPGAPGPHGLPGPMGPN
GLPGPKGEPGLHGVKGVKGEPGHKGDRGPLGLPGASGLDGKPGPRGMDGPVGPSGPAGPK
GDRGERGPAGEPGPRGPYGLPGTEGAPGLDGLPGLKAEKGDPGERGEKVSFIRRERNVVL
TTPLCPQGEKGKKAKKGPKGEKGEQGAPGLDAPCPLGFRGFKGEKGEPGQPGLDGLDAPC
QLGPDGLPMPGCWQK
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgacggctgcaggatctaaaggagacactagacgtgctgaagatatggagagtaaagct
gcttcagatgggcagcgccgttgcagcaggactttccccaatgtcctgtcatttatactg
tctcttctgtgcgtatcatactgtttacttctcagtgtaagaacctcagagttccaagat
agggtttttgcgttagaaactggaaaaggagagttgtattaccatcgggccccagccttt
tcagtggatcaactcaattctatggtgcaagaaagagtggatgaacttctggcgcagaga
tcatacgaacatttggcaaaaatcaggattgcacgggaagcaccgcctgaatgcagctgt
ccagcaggccctccaggaaagcgaggaagaaggggcagaaatggcgaatcaggaccacct
ggccctcctggtccaaaaggtgataagggggatcaaggcgaccaaggtccacggatggtc
ttccctaaaatcaatcatgggtttctttctgctgatcagcagctcataaagcgtcggctc
attaagggagatcaaggtcaggctggtcctcctggacctccagggcccccaggaccaccc
ggcccccgtggtcccccaggagacacagggaaggatggacccagaggtgtgccaggcctg
ccgggagaaccaggaaactcaggggaagtgggaccaatgggacctgaggggcctccagga
caaaagggctctcttgggtcccctgggattgcaggtgtggacggccagaagggggaacca
ggtttgccagggatagatggaacacctggaatcaagggtgaaataggagaatggggtgaa
aagggcgactctggggagcctggccagaaaggggacatgggcgcaaagggggaatctggt
tcatctgcagctgggataaagggtgaaccaggagaaactggccgttcagcgcagaagggt
gaaccaggtctacctgggcttcccggacttcctgggataaagggcgagccaggttttatg
ggtcctcagggtgagcctgggttaccagggttaccaggaacaaagggagaaaggggagac
tctggcccacctgggaaaggggagcgaggagaaagcggtcctcatgggccaaagggggtt
cctggggaggctggagccacaggccccaaagggtcaaagggtgattctggagagacaggt
aaattaggagccatggggcccaggggtccaccagggcaaaagggtgaccaaggagccaca
gagataattgactacaatggaaacatccacgaagcactgcagaggattaccactctaact
gtcacgggtcccccaggaccacctggactgccaggacatcaagggataaagggagagaca
ggagcccaagggaatcccgggctggatggcgagcagggtcccaaaggttcaaaaggtgac
atgggtatcccgggcatgtcaggagagaaaggagaaataggtctacctggattgccaggc
gctaatggcatgaaagcagaaaagggagattctggtttacctggtcctcaaggtcaatct
cttattggtcctcctggagctccagggccccacggcttaccaggcccaatgggacctaat
ggcttacctggacccaagggtgaaccagggttgcatggtgttaaaggagtgaagggtgag
ccagggcataagggtgacagaggaccccttggtctcccaggagcgtctggcttagatggc
aagccaggaccccggggtatggacggtccagtaggtccttcaggcccggctggcccaaaa
ggtgacagaggtgaaaggggaccagctggtgaacctgggcctagaggaccatatggatta
cctggcacagagggggcccctggattggatggattaccaggtctgaaggcagagaaagga
gatcctggtgaaaggggagaaaaggtgtcctttataagaagagagagaaatgttgttctc
accacgccattgtgtccacagggggaaaagggaaagaaggccaaaaaagggcctaaaggg
gagaaaggagaacagggtgcccctggattagatgcaccttgcccattgggattccgggga
tttaagggtgaaaagggggagccaggtcagcctggcctggatgggctggatgccccctgc
caattgggtccagatggactaccaatgcctggatgctggcagaagtaa
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