Acipenser ruthenus (sterlet): 117422033
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Entry
117422033 CDS
T07327
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear exosome regulator NRDE2-like
KO
K26109
nuclear exosome regulator NRDE2
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117422033
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117422033
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
NRDE-2
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_19
HAT_Syf1_CNRKL1_C
HAT_PRP39_C
Motif
Other DBs
NCBI-GeneID:
117422033
NCBI-ProteinID:
XP_033892533
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Position
16:27285967..27300417
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AA seq
1170 aa
AA seq
DB search
MNMSLFPAFAGLSSNNNLKNENSSKELDWLSNQSFRTEDALTLHQRCTKGEEQALQRSAD
PSLSVDQPPLEEPAEEGFPKPKKKKKDKKKKKQKRKHKKKSREQSESSRSGSDSDSPRGH
ASEASRLEQETEKLRQEQIHLQGCFVWLDDLQTPTDQPFCVDKKADRANWEYKSLYRGDI
ARYRRKGNSCLGLNPKRHFITWVDSASEKKKIEKKQDRYFSKAGRLLLSTEGFPVHPGDV
GPVAKQTPVTSDFMAVSDWKEEDVRGPAAPAWVNPLGVYDASTTLWLQGKGQPEPENQQA
RPAGAPGNVNTAMISKVEEFNRKLRENPEDAKTWMEFVNFQDELMTGPSPFTMNERESEK
RKTSLKVTLEKKIAILERAIESNPGSVKLKLARLELCKELWEPSTLLKEWKKLVFLHPNN
TELWKKYLLFCQSQFSTFSVLKVSSIYGKCLTTLAAVHDGSMVSHPALPGTEEAILEIFL
QQCHFLRQAGHSEKVISLFQAVLDFTFFKPDSVKDLPTREQVEFFEPFWDSGEPRFGERG
ARGWQAWMHQQERGGWLIPNEQDDEDEDIEDDTEVKDKTLPKWRIWLDVEASRETKNWLP
WRPDKSKGQSEEDCEDPDRQVLFDDIGPSVIRILKPELRFQLMCSFLQFLGILSGCSYSG
PDWSITLDEWSVFDSGLVTERPLTSLDLQCSGVSCIGHMATLHSVKKQIGHCKDGEEFIH
NVFHQALPLFSKEEKSLLSLYWLQYEKLKVLHYLQNKNKKKLKSQGKKSKKLAKNLLKEA
ENRNNLALWKEYAHLEWLLGNLEDSRKVFDTAITLATSQGLQNPALCSLCLLYTQLELEA
MEDAVGGAAASRAVHILTKLAECGLYSAYKGQVSPVNILKARKAYEYAFLGCLTESSLLC
DSTVATMRADVAVSLVACFALFQYLTVGIEAADRVYMQALEKTSELFLHKKTEITNLWTQ
PTELETLTLMRSVLLRYHMKVNVYPLGPLRETLTSALKLFPGNHSLWRLYVQTENKYHNA
SRARRFFDSVTRNADMITPQLFAIYAEQKRKELVDSVQRVDIGGVYSTIPESGLSNRIRV
LFEHAVQSDNGAHCPLLWRMYLHFLVSQGNRERSRGAFYKALQDCPWVKGLYMDAIEYFP
DHMQEIMDLMTEKELRVRVPLEELDILLED
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atgaatatgtcactttttccagcttttgcgggactgtctagtaataataacctaaagaat
gaaaattcatcgaaagagttggactggctaagcaatcaaagcttccgcactgaggatgcg
ttgacactgcatcagcgctgtaccaagggggaagaacaggctcttcagaggtcagccgac
ccaagtttgtctgttgatcaaccgccattggaagaacctgctgaggaaggcttcccaaaa
cctaaaaagaagaaaaaggacaaaaagaagaagaaacaaaagagaaaacacaagaagaaa
agcagagagcagtcagagagcagcagatctggttctgacagtgattcccccaggggtcat
gcaagtgaggcttcaaggcttgagcaagaaacagagaagctaaggcaggagcaaatacac
cttcaaggttgctttgtttggctcgatgaccttcagaccccaacagatcaacctttctgt
gttgataagaaagcagaccgtgccaactgggaatataaatcactctatagaggagacatc
gctaggtacaggaggaaaggaaactcctgcctgggcctaaacccaaaaaggcattttata
acttgggtggattcagcatcggagaagaaaaagatagagaagaagcaggatcggtacttc
agcaaagcaggacgcctgctgctgagcacagaggggttcccagtgcaccccggtgatgtg
ggcccagttgccaagcagacgcctgtcactagtgatttcatggcagtctctgactggaag
gaggaggatgtcagaggccctgccgccccagcctgggtcaatcccctgggggtttatgat
gcctccaccaccctctggcttcagggaaagggtcagccagagcctgagaaccagcaggcc
aggccagccggggcccctgggaatgtaaacactgcgatgatcagtaaagtggaagaattc
aacaggaagctaagagaaaacccagaggatgccaaaacatggatggagtttgtaaacttt
caggatgaactaatgacaggacccagtcccttcaccatgaatgagagggaatcagaaaag
cggaagacatccctcaaggtgactcttgagaagaaaatcgctattttagagagagccatc
gaaagcaatcctggcagtgtgaagctgaagttagccaggctggagctgtgcaaggaactg
tgggaaccctctacattgcttaaagagtggaagaagcttgtttttctgcatccaaataac
acagagctgtggaagaagtatcttctattctgtcaaagtcagtttagcaccttctcagtg
ttaaaagtcagtagtatttatggaaagtgccttaccaccttagccgcagttcatgatggc
tctatggtgtcccaccctgcactgcctggtacagaggaagccatactagaaatatttctt
cagcagtgccacttcttgagacaggctggccactcggagaaagtgatttcactctttcag
gctgtcctcgactttaccttctttaaaccagatagcgtgaaagatctgccaaccagagag
caggttgaattttttgagccgttctgggacagcggggagccccgctttggggagagagga
gctcgaggctggcaagcctggatgcaccagcaggagaggggcggctggttgataccaaac
gaacaagatgatgaagatgaagatattgaagatgatactgaagtgaaggataagactttg
ccaaaatggcgtatttggctagatgttgaggcctcacgggagacaaagaactggttgcca
tggagacctgataaatcaaagggtcagtcagaggaagattgtgaggaccctgatagacag
gttttgtttgatgatattggcccctccgtgattagaattttaaaaccagagctcaggttt
cagctgatgtgttcctttctgcaattcctggggattctgtctggatgcagttattctggt
ccggactggagtataacactggacgagtggtctgtgtttgacagtggactggtgacagaa
aggcctttgacttcactggaccttcagtgctctggggtgagctgcatcgggcacatggcc
actctccacagtgtgaaaaagcagatcggtcactgtaaagacggggaggaattcatacac
aatgtcttccatcaggcattgccactgttctctaaagaggaaaagtctcttctctccctc
tattggctccagtatgagaaattaaaggttctccattatcttcagaacaaaaacaagaag
aagctgaaatctcaagggaagaaaagtaagaaactggccaaaaatctcctgaaagaggct
gaaaaccggaacaacctggctctctggaaggagtatgctcatctagaatggttgctgggg
aacctggaagactctagaaaagtgtttgacactgccattacactggccacaagtcaagga
cttcagaatcctgcactgtgcagtctgtgcttgctgtacacacagttagaattggaagca
atggaggatgctgttgggggggctgcagcttctcgggcagttcatattttaacaaaactt
gcagagtgtggactatactccgcctataaaggacaagtgtctcctgttaatatcctgaaa
gcccggaaagcttatgaatatgcattcctaggctgtttaacagaaagcagtctgctgtgt
gactccacggttgccacgatgagggcagatgtagcagtcagcctggtagcctgttttgct
ctatttcagtatctaacagtgggtattgaggcagctgacagagtttatatgcaggctctt
gagaaaacctctgagctttttttacataaaaagacagagattacaaacctgtggactcaa
cctacagagctggaaacacttactctgatgcgctccgtgctgctcaggtatcacatgaag
gtcaatgtctacccattaggccctcttcgagaaacacttaccagtgctttgaagctgttt
cctggcaaccacagcctttggaggctatatgtgcaaacagaaaacaagtaccataacgcc
agccgagctaggaggttttttgacagtgtcacaagaaacgctgacatgattactccccag
ttgtttgccatctatgcagaacagaagagaaaagaactggtagattctgttcaaagggtg
gatattggaggagtttattctactataccagaaagcggactgagcaaccggataagagtg
ttgtttgaacatgctgtacagagcgacaatggagcacactgtcccttactatggagaatg
tacttgcactttctggtgtcccaaggaaatagagagaggagcaggggagcattttacaaa
gctctccaggactgcccctgggtaaagggtctgtatatggatgcaatagaatatttccct
gatcacatgcaggagattatggatctaatgaccgagaaagaattgagagtgagggtgcca
ttggaagaactggacattctccttgaagactga
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integrated database retrieval system
