Acipenser ruthenus (sterlet): 117422456
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Entry
117422456 CDS
T07327
Name
(RefSeq) LOW QUALITY PROTEIN: nucleoporin NUP188 homolog
KO
K14311
nuclear pore complex protein Nup188
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117422456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117422456
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117422456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
117422456
NCBI-ProteinID:
XP_033893390
LinkDB
All DBs
Position
16:complement(4572686..4589184)
Genome browser
AA seq
1739 aa
AA seq
DB search
MAAAEMCVRSSRELWTILIGRSALRDQTQIEEELDRNWERLLSGLSYYKPPSSASAEKLK
ADKDVAPPMKDFGFRISKFLGLDEQQSVQILQCYLQEDYRGTRDALKSVLQDERQSQALL
LKVFDYYYEERMCMLRCVLLLLTYFQDERHPYRAEYSKCVDKLEKELVFKYRHHFELLFR
AEAPSWETHGNLMTERQVSRWFLQCLREQALLLEIIFLYYAYFEMAPNDLLAFTKIFKDQ
GFGSRQTNRHLVDKSMDALIDRIGYFSSLILVEGMDIDFLHKCALEDRTAEHQFANTPTV
CKEMDQLLQTFGDIPHHAPVLLAWVLLRHTLSPDESSPVIRRIGNTSLQLGVFQYLTSML
KALGGSGNNCTASTARMCVYGLISFVITSFEEDALGSQQHLIDAACEVLAAPSLAELFWE
TKPTLGLGMILDSAMGMFPQKIGPLLQLLTALLSDKSTAKRVYSFLDKMSYYTEVYKRKP
NDILSHEDETIWRRQTPKLIYPLGLGQTNLRMPLGTLGQVVLGEQGYMVRWDYSYSCWTL
FTCEIEMLLHVVSTADVIQHCQRVKPILDLVHKVISTDWSISDCLLPITSRIYMLLQRLT
SVINPPIDVIASCVNCLTVLAARMPAKVWADLHHTGFLPFASSPVTSIAQSISAEGMKAG
NYGNLLILIEQPQGEYAVTIAFLRLITTLVKGQLGSTQNKGLIPCVLLVLKEMLPTYHKW
RYNAYGVRERIGCLILELIHAILNLNPEGEGSAPSLQSLCIYSLANTEAGQAVVSIMGVG
VDTIDVVMAAQPSSGGSEGPGQMLIQTVKLAFSVTNNVIRLKPPSDNVSPLEQALTQHGG
HGNNLIAILAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDAFLTRLQ
SKTEDMRIKVMILEFLTIAVETQPGLIELFLNLELKNGAEGSKEFLLGEWSCLQVVLELI
DSRQQGKYWCPPLLHRAALSFLHALWQDRRDSAISVLHTKEKFWENLATPLFGTLPPPSE
TTEPCILETCALVMKIICLEIYYVASGSLEKSLKDTLVKFSSSKRYEYWSMYVTSLVCHM
AETEGDGIRSVTECQMLVSAWRMLLILSTSHSDVMQLTDGSVREQLFLDVLSGTKAALLV
PMSVPCLRLGSMLATLLLILLKQWKSVLVSAPDILDPLAQVLESILQADQQLMERTKAKV
FSALLSVLQSLQQKEDEPPHIPQLPQLLLSVCETAQEETLALLDSTRHTAVFGESVSEDK
DSMETDTAPRALHKDQRDGVCVLALHLAKELCKMDVEGDHWLQVMRKLPVIPSILGTLEL
SLRLKQNLHFTEAALHLLLTMSHTQQGAAAVAGAGVIQSICLPLLSVHEISTNGASQSSG
FSRKSQDAPSWPGVYRLSMSLMESLLKTLHYNFLNDALDFVGVHQERILQCLNAVRTVQS
LACLDEADHTVGFLLQLSHFCKEWQFHLPQLLRDVQVNLCYLCQTCTYLLHSKKMLRHYL
QTKNGDAIPAGPLPRSQRAPQTPSKQPSSEEEQAEHRALQTVQCSLLKILSKTLAALRHF
TPDFCQILLDQSLDLAQYNILFVLSFTTPAFESDVAPSFGTLLATINVSLSMLGEVEKKK
EPAPSNVGSSFEETKPVKSLLMFSMENCFHILISQAVRYLKDPTVHLRDKQRMKQELSSE
LSTLLSSLNRYLRRGSPSSPAGGLLLSPQGKPSASGSKSGLEGQDLIQLVQAFVKHVQR
NT seq
5220 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgcggagatgtgtgtcaggagtagcagagagttatggactatcttgattggg
agatcagcactgagagaccagacccagattgaagaagagctggacagaaactgggagcgg
ttgctatcaggactgtcttattataaaccccctagttctgcttcagctgagaaacttaag
gcggataaggatgtggctccaccaatgaaggactttgggtttagaattagtaaattcctg
ggcctggatgaacagcagagtgtgcagatattacagtgttatctacaggaggactacaga
ggtaccagggatgcactgaagtctgttttgcaggatgaaaggcagagccaagcgctgcta
ttaaaggtttttgattactactatgaagagaggatgtgcatgctgcgctgtgtcctgtta
cttctcacatacttccaggacgaaagacacccatacagggcggagtattcaaaatgtgtt
gataagctggagaaagagctggtgttcaagtaccgacaccactttgaactgctgtttaga
gcagaagctccttcgtgggagacacatggcaatctcatgactgagaggcaggtgtctcga
tggtttctacagtgtctccgggagcaggcactgctgctggagattatattcctgtactac
gcctacttcgagatggcaccaaatgacctcctagctttcacgaaaatatttaaagatcaa
gggtttggaagcagacagacaaacagacacctggtggacaagagcatggatgcactaatt
gatcgaattgggtacttcagttctctcatcctggtggaagggatggacattgatttcctg
cacaagtgtgcccttgaggataggacagcagagcaccagtttgctaacactcccacagtc
tgcaaagaaatggaccagctgttacaaacatttggagacattccccatcatgcacctgtg
ctgctagcgtgggtattgctgcgccacacactgagcccagacgaatccagtcctgtgatc
agaaggataggcaatacctccctgcagctcggtgtctttcagtacctgacaagcatgctg
aaagctctgggtggcagtggtaacaattgcacagccagtacagcacggatgtgcgtctat
ggcctcatttcctttgttattacatcttttgaggaagatgctctcggaagccagcagcac
ctaatagatgcagcttgtgaagtcctagctgcccccagccttgcagaacttttctgggaa
acaaagccgactctgggtctggggatgatcttggacagcgcaatgggaatgttcccacag
aagataggccccctccttcagcttctcacggctctgctttcagacaaatccactgctaaa
agggtgtacagtttcctggataagatgtcgtattacacagaagtgtacaaacgcaaacct
aacgacatcctgtcacatgaggatgagaccatctggaggagacagacacccaaactcatt
tatcccctcggtttggggcagacaaacctgcgtatgccgctaggtactttaggccaggtg
gtgctaggagagcaggggtacatggtgcgctgggattactcctacagctgctggaccctc
ttcacctgtgaaatcgagatgctgctacatgtcgtgtccactgcagatgtcatccagcac
tgccagagagtcaaaccaatccttgatctagtccataaagtaatcagcaccgattggtca
atttctgactgtcttctcccaataacatcgcgtatttacatgctactgcagagactgacc
tccgttataaacccacccattgatgtgattgcttcctgtgtgaattgtttaacagtatta
gctgcgagaatgccagcaaaggtttgggcagaccttcatcacacaggatttctgccgttt
gcttcatctcctgtgaccagcattgcacagtctattagtgccgaaggtatgaaggctggc
aactacggcaatctgctcattctaattgagcaaccgcagggggaatatgctgtgacgatc
gctttcctacgcttgatcaccacgcttgtcaagggccagttaggtagtacacagaacaaa
ggccttattccttgtgtgctgttggttctaaaggagatgctgccaacatatcacaagtgg
cgctacaatgcctacggggtgcgagagagaataggctgcctgattctagagctgatacat
gcaattctaaatctaaaccctgaaggagaaggaagtgccccgagtttgcagtccctgtgc
atctacagcctggctaacaccgaggctggacaagctgtcgttagtatcatgggcgtcgga
gtggataccattgatgtagtcatggctgctcagccaagcagtggtgggtcagaaggacct
ggacagatgctgattcagactgtgaagctagccttttcagttactaacaacgtcatcaga
ttgaagcctccctctgataacgtgtcccccctggagcaggctctgacgcagcatggtggc
catggaaataacctgattgctattttggcgaagtacatctaccataaacatgacccagca
ctgccacgccttgctatccagctgctcaaacgcttggcaacggtggctcccatgtcggtg
tacgcctgcctgggcagcgatgcagctgcgatacgggacgcttttcttacacgtctgcaa
agcaagacggaggacatgaggatcaaagttatgatcctggagttcctgacaattgcagtg
gagacgcaaccaggcctcatagagctgtttctcaacctggaattaaaaaacggagcagaa
ggatcaaaggagtttctgcttggggaatggagctgtctgcaggttgttcttgagctgatt
gactccagacaacaggggaagtactggtgccctccactgctacaccgagcagccctctcc
tttctccacgcactctggcaggaccggagagacagtgccatatctgtactgcacaccaag
gagaaattttgggaaaatttggcaactccactttttgggaccctcccccctccctccgag
acaacagagccttgtatacttgaaacatgtgccttggtcatgaaaatcatttgcctagaa
atctactacgttgccagcggttccctggagaagtctttgaaagacacgctggtgaaattc
tccagcagcaagcgctatgaatactggtccatgtatgtgacgtcactggtgtgccacatg
gctgaaacggaaggggatgggatccgctcagttacagagtgccaaatgttagtctctgct
tggagaatgctgctaatcctctccactagtcattccgatgtgatgcagctcactgatggt
agtgttcgggagcagctgttcctggatgtcttaagtgggaccaaagctgcgttattggtg
ccaatgtctgtcccttgcctgcgacttggatcaatgctggccaccctgctattgattctg
ctcaagcagtggaagagtgttctggtttcagctcctgacatactggacccactggctcag
gtcttggagagcatcttacaagcagaccaacagctgatggaaaggaccaaggcaaaagtt
ttttctgcacttctttcagttctgcagagcctacaacaaaaagaggacgagcccccccac
attccccagctcccccagcttctgcttagtgtttgtgagacggcacaggaagagacatta
gccctgctggacagcacacgacacacagccgtgttcggggagagcgtctcggaggacaag
gacagtatggagacagacacagcaccaagggcattgcataaggaccagagggatggggtg
tgtgtgctggccctgcaccttgctaaggagttgtgcaagatggatgttgaaggggaccat
tggctgcaggtgatgcgcaaactccctgtgatcccctcaatcctcggcaccctcgagctg
agcctgcggctgaaacagaatttgcatttcactgaagctgccctgcacttgctcctcacg
atgtcccatacccagcagggtgcagcagcagtggctggagctggagtcattcagagtatc
tgtttgccccttctcagtgttcacgagatcagcactaatggagcctcccagagctctggt
ttttcgcgtaagtcccaggacgccccctcttggcctggtgtgtatcgcctctccatgtcc
ctgatggagagcctgctgaagacgctgcattataatttcctgaatgatgccctggatttt
gtgggggtccatcaggagagaatactccagtgtttgaatgcagtgcggacagtgcagagt
ttagcctgcctggatgaagcggatcacaccgtggggttcttgctgcagctctcccacttc
tgcaaggagtggcagttccacctgccacagctgctgagggatgtgcaggtgaacctatgt
tacctttgtcagacgtgtacctaccttctgcacagcaagaaaatgctccgtcactacctt
cagactaagaatggagacgccatccctgccggccccctcccccggtctcagcgagcccca
cagaccccctccaagcagccgagttcagaggaggagcaggcggagcacagagccctacag
acggtgcagtgcagcctcctgaagatcctcagcaagaccctcgctgctctccgccacttc
accccggacttctgccagattctactcgaccagtctctggacctggcacagtacaacatt
cttttcgttctgagcttcaccacacctgcgttcgaatctgacgtggcaccctcctttgga
acattgctggccaccataaacgtgtccctgagcatgctgggagaggttgaaaagaagaaa
gaaccagcaccctcgaatgttggttcatcgtttgaggaaaccaagccagtcaagtctctc
ctgatgttttcaatggagaactgtttccacatattgatctcgcaagcagtacgctacctt
aaagatcccaccgttcaccttcgagataaacaaagaatgaaacaggagctgagctctgag
ctgagcaccctcctgtccagccttaaccgttatttgcgccggggttccccctcctccccg
gcaggggggctgctcctctcccctcagggcaagccctctgcctctgggtccaaatcgggg
ctggaaggccaggatctgattcagctggtgcaggcctttgtcaagcatgtccagagatag
DBGET
integrated database retrieval system
