Acipenser ruthenus (sterlet): 117422525
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Entry
117422525 CDS
T07327
Symbol
vps39
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut04140
Autophagy - animal
arut04148
Efferocytosis
arut05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117422525 (vps39)
04148 Efferocytosis
117422525 (vps39)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
117422525 (vps39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
arut04131
]
117422525 (vps39)
Membrane trafficking [BR:
arut04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
117422525 (vps39)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
TPR_Vps41
Clathrin
WD40_like
Beta-prop_RIG_2nd
Lgl_C
Motif
Other DBs
NCBI-GeneID:
117422525
NCBI-ProteinID:
XP_034783749
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All DBs
Position
16:complement(14198041..14223969)
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AA seq
876 aa
AA seq
DB search
MHDAFESVPILEKLPLQIDCMAAWEDWLLVGTKPGHLLLYRIKKDPSSNRFEVTLEKSNK
NFSKKIQQLYVVSQFKILVSLLENNIHVHDLLTFQQITVISKARGATLFACDLQHSSSGE
AKLRMCVAVKKKLQLYYWKDREFHELQGDFAAPDVPKSMAWCENSICVGFKRDYYLIRMD
GRGSIKELFPTGKQLEPLVAPLADGKVAVGQDDLTVVLNEEGVCTQKCALNWTDIPIAME
HQPPYIIAVLPRYVEIRTFEPRLLVQSVELQRPRFISSAGPNIVYVASNHFVWRLVPVSI
ATQIRQLLQDKQFELALQLAKMKDDSDGDKRQQIHHIQNLYAFNLFCQKRFDDSMQVFSK
LGTDPTHVIGLYPDLLPSDYRKQLHYPNPLPSLSGAELEKAHLALIDYLTQKRSHLVKKL
NDADPSPTSPLMEGIPTIKSRKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEES
EYVLKKAHKYSELIILYDKKGLHEKGLQVLLDQSTKANSPLKGHERTVQYLQRLGAENLG
IIFEFAPWVLKICPEDGLKIFTEDLTEVETLPRKEVLSFLKEGFKELAIPYLEHIILVWD
EVGSEFHNCLIQLYLERVQVLMKEYLNSLPEDESPVAAGNEEGELGEFRNKLLNFLEISS
NYEPDRLISDFPFDGLLEERAVLLGRMGKHEQALFIYVHILHNIRMAEEYCHKHYDRLTD
GNKDVYLSLLRMYLSPPDVHCLGPIKMELSEPQANLQAALQVLELHHSKLNTTKAINLLP
ANTQIREIRVFLESILEENAKKKRFNQVLKSLLQAEFLRVQEERIFHQQVKCIVTEEKTC
RVCKKKIGNSAFARYPNGVVVHYFCCKDRSACPTEL
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcgttcgagtcggtgccgatcctggagaagctgccactgcagatcgactgc
atggcggcatgggaggactggcttcttgtcgggaccaaaccaggacatctcctcctctat
agaattaagaaggatccaagcagtaacaggtttgaagtgacactggaaaaatccaacaaa
aatttctccaagaaaattcagcagctgtacgtggtgtcccagtttaaaatccttgtcagt
ctgctagaaaacaatatccacgtccatgacctgctgactttccagcagatcactgtcatc
tccaaggctagaggggccactctgtttgcatgtgacctccagcactccagttcaggagag
gcgaagctgaggatgtgtgttgctgtgaagaagaagctgcagctctattactggaaggac
agagagttccatgaactccagggggatttcgcggccccggacgtccccaaatccatggcc
tggtgtgagaactccatctgtgtggggttcaaacgggactactacctgattcggatggat
gggcggggctctatcaaggagctgttccccacagggaagcagctggagcccctggttgcc
ccactggctgatgggaaagtggcagttgggcaggatgacctgacagtagtgctcaatgaa
gaaggagtctgcactcagaaatgtgccctgaactggactgatatccccattgcaatggag
caccagcccccctatataatcgcagtgctgcctcgctacgttgagatccgcacctttgag
cctcggttactggtgcagagcgtggagctgcagagacctcgcttcatctcctccgcgggc
cccaacatagtttacgtcgccagcaaccactttgtgtggcggctggttcctgtctctata
gcgacacagatccggcagcttcttcaggataagcagtttgaattggctctgcagctggca
aagatgaaggatgattccgatggagacaagaggcagcaaatccaccacatccagaacctg
tatgccttcaacctgttctgtcagaaacgcttcgacgactccatgcaggtcttctccaag
ctgggcacagatcccacccacgtgattgggctgtacccagacctgctgccctccgactac
aggaagcagctgcactaccctaaccccctgcccagcctgtcgggcgcagaactggagaag
gcacacctggcactcatcgactacctgacccagaaacggagtcacctggtgaagaagctg
aatgatgcggacccctcgcccacctctcctctcatggaggggattcccaccatcaagtcc
cgcaagaaactcctgcagatcattgacaccacgctgctcaagtgctacctgcataccaac
gtagccctggtggcaccgctgctgcgcctggagaacaaccactgccacatcgaggagagc
gagtacgtgctgaagaaggctcacaagtacagcgagctcatcatcctatacgataagaag
gggctgcatgagaaaggcttgcaggtgctgctggatcagtccacgaaggctaactccccc
ctcaagggccatgagaggacggtgcagtacctccagagactgggggcggagaacttggga
atcattttcgagttcgctccctgggtgctgaaaatatgtcctgaagatggactgaagatc
ttcactgaagacctcacggaggtggagactctgccgagaaaggaggtcctgtccttcctc
aaggagggcttcaaggaactggccatcccatacctggagcacattattctggtgtgggac
gaggtgggatcagagttccataactgcctgatccagctgtatctggagcgagtgcaggtc
ctgatgaaggagtacctgaactcgctgcccgaggatgagagcccagtggctgccgggaat
gaggagggggagctgggggaattccggaacaaactcctgaacttcttggagatttccagt
aactacgaaccagaccgtctcatcagcgacttccccttcgacgggctgctggaggagcgc
gccgtgctgctgggccggatggggaaacacgagcaggccctcttcatctacgtgcacatc
ctgcacaacatcagaatggctgaggagtactgccacaaacattatgacaggctcaccgat
ggaaataaagatgtgtatctgtctctgctgcggatgtacctttcccccccagacgttcac
tgcctggggccaatcaaaatggagctgtctgaaccgcaggccaatctacaggcagcgctg
caggtcctggagcttcatcacagcaaactgaacaccaccaaggcgattaaccttcttccc
gctaacacccaaatcagggagatccgagtttttctcgagagcattctggaggagaatgcc
aagaagaagagattcaaccaagttctcaagagcctgctgcaagcagagtttctcagggtt
caggaggagaggattttccaccagcaggtgaagtgcatcgtcacagaggagaagacgtgt
cgcgtgtgcaagaagaagattggaaacagtgcgtttgccaggtacccgaacggtgtggtg
gttcattatttctgctgtaaggaccgcagcgcctgcccaacggagctgtga
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