Acipenser ruthenus (sterlet): 117422599
Help
Entry
117422599 CDS
T07327
Name
(RefSeq) vacuolar protein sorting-associated protein 18 homolog
KO
K20181
vacuolar protein sorting-associated protein 18
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut04140
Autophagy - animal
arut04148
Efferocytosis
arut05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117422599
04148 Efferocytosis
117422599
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
117422599
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
arut04131
]
117422599
Membrane trafficking [BR:
arut04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
117422599
Hops complex
117422599
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pep3_Vps18
Clathrin
zf-RING_16
zf-ANAPC11
zf-RING_11
DUF5600
KNOX2
DUF1664
zf-rbx1
zf-C3HC4_2
DUF4446
DUF2175
Apolipoprotein
zf-C4H2
Motif
Other DBs
NCBI-GeneID:
117422599
NCBI-ProteinID:
XP_033893676
LinkDB
All DBs
Position
16:23675705..23683185
Genome browser
AA seq
979 aa
AA seq
DB search
MASILDEYEDSQIIRHPTQQQHTRLSASNIGITHSGFVNARLEEEKPIFNKQRIDFSPPE
KINHFAVCNNQLCMSLGKDTLLRIDLGKPDQPNQIELGRKDDAKVHKLFLDPTGSHLLIS
LNTNECLYLNRNTQKVRSLSRWKGHLIESIGWNKFLGTETNTWPILVGTSQGQIYEAEIS
TSEGSLFSTNPDQYFRLVYTLDEDGKSAPVCCLEIERGVDSKFFIIATTRKRLFQFVGKV
PEGAEQQGFSSIFSQNADNFPSFQEFPANLGFSEIAFYTPKLRTSPRSFAWMMGNGVLYG
TLNYARPDSLLSDVQVWEYPPDIDFNFNKPISIVLTQFHFLLLLPDRVKAVCILNGQVVY
EDVFPDKFGSLKKMNKDSAGGLVWIYTEKAVFRYHIQREARDVWQMYMSMSKFDLAKEYC
KDRPECLDIVLAKEAEHCFQNKKYLESAKCYALTQNYFEEIALKFIDAKQEDALKEFLMK
KLNNLKPSEKTQITLLVTWLTELCLNRLGTLEGDESKRSIFLESREEFRKFLSSSKIKEC
LYNNRTTIYDLLASHGNVEDMVFFSVIMQDYERVISHYCQHDDYEAALEVLSKHRDEKLF
YKFSPVLMQHIPKKVVDAWIQMGKKLDSRNLIPALVNYSQIGSTEQINETVRYMEFCVYE
LAVTEEAIHNYLLSLYAKYKPESLLLYLEQTGTHSSDIHYDLKYALRLCAEHGHHKACVH
VYKIMELYEEAVDLALQVDVDLAKSCADLPEDDEELRKKLWLKIARHVVQEEKDVKKAMN
CLSSCNLLKIEDILPFFPDFVTIDHFKEAICNSLEEYNKHIEELKQEMEEATESAKRIRE
DIQEMRNKYGVVESQEKCAACDFPLLNRPFYLFLCSHMFHYDCLLQEVSPHLSAYKHSKL
EELQKKLLTTSQPTKSRHRPKEEDTVSLGKGQLSRQQIKSDIDDIIAAECVYCGELMIKS
IDKPFIDPQKYEDEKSSWL
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaatacttgatgaatacgaggactctcagatcattcggcacccaacgcagcag
cagcatacccgcctttcagcatctaacattgggattacacactcaggattcgtaaatgcc
agattggaggaagagaagccgatattcaataagcagaggattgacttttctccccctgag
aagattaatcactttgcagtctgcaataaccaactttgtatgagccttgggaaagacacc
ctgctgaggattgatcttggaaagcctgatcaaccaaatcagattgaacttggacgcaag
gatgatgcaaaagtacacaagctattcttggatcctacaggttcccatctgctgatcagc
ctaaatacaaacgagtgcctgtacctgaacagaaacactcagaaggtgcggagcctctca
cgatggaagggtcatctcattgagagcattggctggaacaagttcctgggtacagagacc
aacacatggcccatcctggtgggcaccagccagggacagatctatgaagcagagatctcg
acatcagaaggaagcctattcagtaccaacccggaccagtattttagactggtctacact
ttagatgaagatggcaaatcagcccctgtttgctgtttggaaattgagcggggggtcgat
tcgaagttcttcatcatagcgaccacgcggaagcgtctgttccagtttgtcgggaaagtg
ccagaaggtgcagagcagcagggctttagttccattttcagccaaaacgcagacaatttc
cccagctttcaggagtttccagccaatcttggcttcagcgaaatagcgttttacaccccc
aagctgcgtacctcgccgcgatcatttgcctggatgatgggtaatggagttttatatgga
acactgaactatgcccgtcctgattctctgttaagtgatgttcaggtttgggagtatcct
ccagatatcgatttcaatttcaacaagcccatttccattgtcctgacgcaattccatttt
ctgctcttgctgcctgatcgggtgaaagctgtatgcatcttaaatgggcaggtggtttac
gaagatgtcttcccagacaagtttggttccttgaaaaagatgaacaaagactcagctggc
ggattagtgtggatttacaccgagaaagctgttttccgctaccacattcagagagaggcg
cgagatgtgtggcaaatgtacatgagcatgagcaagtttgacttggccaaagagtattgc
aaagacaggccagagtgccttgacattgtcttggccaaagaagctgagcactgcttccag
aataagaaatacctggagagcgccaagtgttatgcactgacgcaaaactattttgaagag
atcgccttaaagttcattgatgccaagcaggaggatgctttgaaagaattcctgatgaag
aaactcaacaacctgaagcccagcgagaagacacagatcaccctcctggtcacctggctt
acggaactctgcctcaacaggttgggcaccttagaaggagacgagtcgaaacgcagcatt
ttcttggagagcagagaagagttccgcaagttcctcagcagctccaaaatcaaagaatgt
ctgtacaataacagaacgaccatttatgaccttttggccagccacggaaatgtggaagac
atggtgttcttctctgtcattatgcaggactatgagcgtgtgatctcccactattgccag
catgatgactacgaagcagccctggaggtgttgtctaagcaccgcgatgagaagctgttc
tacaagttctcaccagtcctcatgcaacacatccccaagaaggtggtagatgcctggatc
cagatggggaagaaactagactccaggaatctcatccctgctctggtcaactacagtcag
attggcagtacagagcagatcaatgagaccgtacgctacatggagttttgtgtatatgag
ctggctgtaacggaagaggcaatccacaactacctgctgtctctctatgccaagtacaag
ccagagtctttgcttttgtacctggagcagactggaacgcactcttcagatattcactat
gacctcaagtacgccttgcgtctgtgtgctgaacatgggcatcataaggcctgcgtgcac
gtctataagataatggaactgtatgaggaggcagtggatctggcattgcaggttgatgtg
gacctggccaaatcctgtgcagacctgccggaggatgacgaggaactgcggaagaagctg
tggctgaagatcgcccgccacgtggtgcaggaggagaaggacgtgaagaaagccatgaac
tgcctctccagctgcaacctgctcaagattgaagacatcctgcccttcttcccagatttc
gtcaccattgaccacttcaaggaggccatctgcaactcgctggaggagtacaacaaacac
atcgaggagctcaagcaggagatggaagaagccaccgagagtgccaagcggattcgagag
gacatccaggagatgaggaacaagtacggtgtggtcgagtctcaggagaaatgcgctgcc
tgtgactttcccctgctcaaccgcccattttacctattcctgtgcagccacatgttccat
tatgactgcctccttcaagaggtcagcccccacctgtctgcttacaagcacagcaagctg
gaggaactccaaaagaagctgttgaccaccagccagcccaccaagtccagacatcggccg
aaagaggaggacacggtaagcctgggaaaaggccagctgagccgacagcagatcaagtca
gacattgatgacatcattgctgcagagtgcgtgtactgtggggagctgatgatcaagtct
attgataagccttttattgacccacagaagtatgaggatgaaaaatcaagctggctgtaa
DBGET
integrated database retrieval system
