Acipenser ruthenus (sterlet): 117425023
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Entry
117425023 CDS
T07327
Name
(RefSeq) CCR4-NOT transcription complex subunit 1 isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117425023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117425023
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117425023
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117425023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
117425023
NCBI-ProteinID:
XP_033897528
LinkDB
All DBs
Position
22:3393664..3422106
Genome browser
AA seq
2440 aa
AA seq
DB search
MNLDSLSLALSQISYLVDNLTKKNYRASQQEIQHIVNRHGPEADRHLLRCLFSHVDFSGD
GKSSGKDFHQTQFLIQECVSLITKPNFISTLSYAIDNPLHYQKSLKPSPHLFTQLSKVLK
LSKVQEVVFGLALLNSSSSDLKGFAAQFVKQKLPDLLRSYVDADVGGNQEGGFQDIAIEV
LHLLLSHLLFGQKGASGVGQEQIEAFLKTLCRDFPQERCPVVLAPLLYPEKRDFLMDRIL
PDSGGLAKTMMESSLADFMQEVGYGFCASLEECRNIIMQYGVREVTASQVARVLGMMART
HSGLSDGIPLQSISAPGSGIWSDGKDKTDGSQAHTWNVEVLIDVVKELNPNLNFKEVTYE
LDHHGFIIRDSKALQIVVYGIQRGLGMEVFPVDLIYRPWKHAEGQLSFVQHSLMNPDIFC
FADYPCHTVATDMLKAPPEDDNREIATWKSLDLIESLLRLSEVGQYEQVKQLFNFPIKHC
PDMLVLALLQISTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSPSIRQLIMH
SMAEWYMRGEQYDQAKLSRILDVAQDLKSLSMLLNGTPFAFVIDLAALASRREYLKLDKW
LTDKIREHGEPFIQASVTFLKRRCPSIMGGLAPEKEQPKSAQLPPETLATMLACMQSCAG
SVSQDLSETILTMVANCSNVMNKARQPPPGVMPKGRAPSTSSLDAISPVQVSVSVSPLQI
DPLSGMASLNISGSAASHTQSMQGFPTNLSSAFSNPQSPAKAFPALTNPSQTTPFSGIGG
LSSQLPGSLGSSSLTSMGSGLGMPTVNSDPFGQRKMSTSGLNPPTFQQSKIMPSDLSQVW
PEANQHFSKEIDDEANSYFQRIYNHPPHPTMSVDEVLEMLQRFKDSNIKREREVFNCMLR
NLFEEYRFFPQYPDKELHITACLFGGIIEKGLVTYMALGLALRYVLEALRKPFGSKMYYF
GIAALDRFKNRLKDYPQYCQHLASITHFLQFPHHLQECVQYIEYGQQSRDPPVKMQGSIT
TPGSLALAQAQAQAQVPPKAPLPGQVSTIVTTSTTTTVAKTTTITRPTGVSFKKDVPPSI
NTTNIDTLLVATDQTERIVEPPENVQEKIAFIFNNLSQSNMTQKVEELKETVKEEFMPWV
SQYLVMKRVSIEPNFHSLYSNFLDTLKNQDFVKMVLSETYRNIKVLLTSDKAAANFSDRS
LLKNLGHWLGIITLSKNKPILYTDLEIKSLLLEAYVKGQQELLYVVPFIAKVLESSVRSM
IFRPQNPWTMAIMNVLAELHQEHDLKLNLKFEIEVLCKNLSLDINDLKPGNLLKDKDKLK
ALDEQLSAPKKEAKPPEEMLPIVPPGEFLPFAAAPSTPATTTTCTATGPPTPQFSYHDIN
VYALAGLAPHINFNQNIPLFQAHLQLKQYVRQAIERAVQELVHPVVDRSIKIAMTTCEQI
VRKDFALDSEESRMRVAAHHMMRNLTAGMAMITCREPLLMSIATNLKNSFAAALRAPTQQ
QREMMEQAAAQIAQDNCELACCFIQKTAVEKAGPEMDKRLATEFELRKHARQEGRRYCDP
VVLTYQAERMPEQIRLKVGGVDPKQLAVYEEFARNVPGFLPSNDLSQPTGFLAQPMKQQA
WATDDVAQIYDKCIADLEQHLHAIPPALAMNPQTQALRSLLEAVVLARNSRETIAALGLL
QKAVEGLLDATSGADADLLLRYRECHLLVLKALQDGRAYGSQWCNKQITRCLIECRDEYK
YNVEAVELLIRNHLVNMQQYDLHLAQSMENGLHYMAVAFAMQLVKLLLVDERSVSHITEA
DLFHTIETLMRTSAHSRANAPEGLDDGYSVLAETPSNSKLASVAEDHRLPQLMEVVRSNY
EAMIDRAHGGPNFMMHSGISQASEYDDPPGLREKAEYLLREWVNLYHSAAAGRDSTKAFS
AFVGQMHQQGILKTDDLITRFFRLCTEMCVEISYRAQAEQQHNPAASAAIIRAKCYHNLD
AFVRLIALLVKHSGEATNTVTKINLLNKVLGIVVGVLIQDHDVRQTEFQQLPYHRIFIML
LLELNAPEHVLETINFQTLTAFCNTFHILRPTKAPGFVYAWLELISHRIFIARMLAHTPQ
QKGWPMYAQLLIDLFKYLGPFLRNVELNKPMQILYKGTLRVLLVLLHDFPEFLCDYHYGF
CDVIPPNCIQLRNLILSAFPRNMRLPDPFTPNLKVDMLSEINIAPRILTNFTGVMPPQFK
KDLDSYLKTRSPVTFLSELRSNLQVGGAILGPWKHLQHSDTSLDQVSNEAGNRYNIQLIN
ALVLYVGTQAIAHIHNKGSTPSMSTITHSAHMDIFQNLAVDLDTEGRYLFLNAIANQLRY
PNSHTHYFSCTMLYLFAEANTEAIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPAFK
FWNHDFVHCAPEIEKLFQSVAQCCMGQKQAQQVMEGTSAS
NT seq
7323 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttgattcgctctcgctggccttgtctcaaatcagttacctggtggacaattta
actaagaaaaactacagagccagccagcaggaaatacagcatattgtgaatcgacacggc
cccgaggcagacaggcatttattacgctgtctattctcgcatgtggattttagtggcgat
ggtaaaagcagcggcaaagattttcatcagacacagtttttgatccaggagtgtgtgtcg
cttataaccaagccaaattttatctcaacactgtcctacgctattgacaatccattacac
tatcagaagagtttaaaaccttcaccccatttgtttactcagctgagtaaagttcttaag
ttaagcaaggttcaagaggttgtttttggccttgccttgttgaattcttccagctcggat
ctgaaagggtttgctgcccagtttgtgaaacagaagctccccgatcttctgcgttcttac
gtagacgcggacgttgggggtaaccaagaaggtggcttccaggatattgcaatagaggtc
ctgcacctgctcctctcccatctcctctttgggcagaagggagcctctggggtcggacag
gagcagattgaagctttcctcaagactctgtgcagagattttccgcaggagcgctgtcct
gtggtgcttgcaccactgctttaccctgaaaaacgggactttctgatggacaggatcctg
ccagactctggagggttagctaagaccatgatggagagttctctcgcagactttatgcaa
gaagttggctacggcttctgtgcaagtcttgaagaatgccgcaatataatcatgcagtat
ggagttcgggaggtcaccgcatcccaggtggccagagtcctgggcatgatggcccgcact
cactccggcttatctgatggcattccccttcagtccatctctgctcctggcagtgggatc
tggagtgatgggaaggataagactgatggatctcaggctcacacctggaatgtggaagtt
ttaattgatgttgttaaagaactgaatcccaatttgaacttcaaggaagtgacttacgaa
cttgatcatcatgggttcatcattcgggacagcaaggcactgcagatagtggtgtatggt
atccaaaggggactgggaatggaagtgttccctgtagatctcatttacaggccttggaaa
catgcagagggccagctgtcttttgttcaacattccctgatgaacccagatatcttctgt
tttgcggattacccctgtcacactgttgctactgatatgttaaaagcaccaccggaggat
gataaccgggaaatagcaacatggaagagtctggacctaattgaaagcctgttacgtctg
tcagaggtggggcagtacgagcaggtgaaacagctcttcaacttccccatcaagcactgt
cctgacatgttagttctggccttactacagatcagtacctcctggcacactctgcgccat
gaacttatttctaccctcatgccaatcttcttgggaaaccatcccaactctgccattatt
ttgcactacgcttggcacggacagggtcagtctccctctatccgtcagctgatcatgcac
tctatggcagagtggtatatgcggggagaacagtatgatcaggcaaagctctcgcgcatt
ctggatgtggctcaggacctgaagtctctatccatgctgctaaatggtactccgtttgcc
tttgttattgaccttgctgcacttgcatctcgccgagaatacctcaaacttgacaaatgg
ctgacagataaaatacgggagcatggggaacccttcatccaggccagtgtgacattctta
aagcgacggtgcccttccatcatgggaggcctggccccagaaaaggaacagcccaaaagt
gcacagctcccacctgaaacactggctaccatgctggcatgtatgcagtcctgtgcaggg
agtgtttcccaggatctgtcagaaacaattctgaccatggtagcaaactgtagtaatgtc
atgaacaaagccagacaaccacccccaggagtcatgccaaagggacgtgctcctagcacc
agcagcttagatgccatctcccctgtacaggtatcggtctccgtctcccctcttcagatt
gaccccttgtctgggatggcgtctttgaatataagtggctctgctgcgtcccacacacag
agcatgcagggatttcctacaaacctgagttctgcattcagcaacccccagtcaccagcc
aaggccttcccggctctcaccaatcccagccagacaacaccattcagtggcattggaggc
ctgtcgtctcaacttccaggttctttaggatcgagtagcttgacaagcatgggaagtgga
cttgggatgccaacagtgaacagtgatccatttggacagaggaagatgagcacatctgga
ttgaacccacccaccttccagcagagtaagataatgccttctgacctctctcaggtgtgg
cctgaggcaaaccagcactttagcaaagagattgatgatgaagccaacagctactttcag
cgcatttacaaccatccaccacaccccaccatgtcagtggatgaggttctggagatgctg
cagaggttcaaggactccaacattaagcgggagcgtgaagtgtttaattgcatgctgagg
aacctgtttgaggagtatcgtttcttccctcagtatcctgacaaggaactgcacatcact
gcctgcctctttggtggaatcattgagaagggactggtcacctacatggcacttgggctg
gccctgcgctatgtccttgaagccttaaggaaaccatttggatccaaaatgtattacttt
ggtatcgctgccctagatagatttaaaaatagattgaaggattatccccagtattgtcag
cacttggcatctattactcactttctacagttccctcatcatttacaggagtgtgtgcag
tatatcgagtatgggcaacagtcccgagaccctccagtgaagatgcagggctcgatcact
acgcctggcagtcttgctcttgcacaggctcaggctcaggcgcaagtgccccccaaggct
cctctccctggccaggttagcaccatagtaacaacatctaccacaaccactgttgctaaa
accactaccatcacccgccccactggagtcagcttcaagaaggatgtgcctccttccata
aacacaaccaacattgacacactgcttgtggccacggaccaaacggagagaatagtggag
ccaccagaaaatgttcaagagaagattgccttcatctttaacaatctctctcagtccaac
atgacacaaaaggttgaagagctgaaggagactgtgaaagaggagtttatgccttgggtt
tcgcaatatctcgtgatgaagagagtcagcattgagcccaactttcacagcctttactcc
aacttcctggatactctgaaaaaccaagattttgtcaaaatggttctaagtgaaacctat
agaaatatcaaggtcctactgacttccgataaggctgcagctaacttctctgatagatcc
ctcctgaagaacctgggccactggctgggcatcatcacattatcaaaaaacaagcccatc
ttgtatacagatttggaaataaagtctttgctgctggaagcttacgtaaagggacagcaa
gagcttctctatgtggtcccatttattgccaaagtgttggaatcgagcgtgaggagtatg
attttcaggcctcagaacccatggactatggcaattatgaatgtactggcagaacttcat
caggagcatgacttgaagctgaacctgaagtttgagattgaagtactgtgcaagaatctg
tccctggatatcaatgaccttaagcctgggaacctgctgaaagacaaagacaagttgaag
gccctagatgagcagctatctgcaccaaagaaggaagctaaaccacctgaggaaatgcta
cccattgtcccacctggagaatttctcccctttgcagctgctccgtctacacctgccaca
actacaacatgcacagctacaggtccaccaactcctcagtttagttatcatgatattaat
gtctatgctctggcagggcttgctcctcacataaatttcaaccaaaatatacccttgttc
caggcccacctgcaactgaagcagtatgtgcgtcaagctatagagagggcagtccaggag
cttgttcaccctgttgtggatcgctccatcaaaattgccatgactacctgcgagcagatt
gtcaggaaggactttgctctggactctgaggagtcacgcatgcgtgttgccgcacatcat
atgatgcgtaacctgacagcagggatggctatgatcacctgtagggaacctctgctcatg
agcatcgctaccaatctaaagaacagctttgctgcagccctcagggctccgacccaacag
cagagagaaatgatggaacaggcagctgcacagatagcccaagacaactgtgagcttgct
tgctgctttatacagaaaacagcagtggaaaaagctggcccagaaatggataagaggttg
gcaactgaatttgagctgcggaaacatgccagacaagagggccgtcgatactgcgatcct
gtggtactgacctatcaagcagagcgcatgccagaacaaattagacttaaggtcggtggt
gtggaccctaagcagctggctgtttatgaggagtttgcacgcaacgttcctggtttcctt
cccagcaatgatctctcacagcccacaggtttcctggctcaacccatgaagcaacaggcc
tgggcaacagatgacgtggctcaaatctatgacaagtgcatcgctgatctggagcagcac
ttgcacgcaatccctcctgcgttggctatgaacccccagacacaggccctgcgtagtctg
ctagaagctgtggtgctggcaaggaattcacgcgaaaccattgcagcattgggcttacta
cagaaggctgtggaaggattacttgatgccacaagtggtgctgatgcagatctcctgctc
cgataccgcgagtgtcatctgttggttctgaaggccctgcaggatggccgtgcctatggc
tctcagtggtgcaataagcagatcaccaggtgcttgattgaatgtcgtgacgaatacaaa
tacaatgttgaagctgtggagctgctgatcagaaaccatctggttaatatgcagcagtac
gacctacacctagcccagtcaatggaaaatggcctgcattacatggctgtggcattcgct
atgcagttagtgaagttactactggtggacgagaggagtgtgagccacatcactgaagct
gacctgttccacaccatcgaaacactcatgagaaccagcgcccactccagagcaaacgct
cctgagggcttggatgatggttactccgttctagctgagaccccctcaaatagtaaactt
gcatctgttgcagaagatcacaggctgccccagctaatggaagtggtccggtcaaactat
gaagcaatgattgaccgtgcccatggagggcctaatttcatgatgcactctgggatctcg
caggcatcagaatatgatgaccctcctgggctgagggagaaggcagagtacctactgaga
gagtgggtgaacctctaccactctgcagctgccggtcgagacagcaccaaggctttctct
gcctttgtgggacagatgcaccagcagggaatcctgaagactgacgatctgataacccgt
ttcttccgactgtgtacggagatgtgtgtggagatcagttaccgcgcccaggcagaacag
cagcacaaccctgctgccagtgccgccatcatccgtgccaagtgctaccataacctggat
gcctttgttagactcatcgcacttctagtcaaacactctggagaggcgactaacacagtg
acgaagatcaacctcctcaacaaggttctgggtattgtggtcggagtccttattcaggac
catgacgtccggcagactgagtttcaacaactgccctatcacagaattttcattatgctg
ctgttggagttgaatgcaccagagcatgtgctggaaaccattaacttccagacattgact
gctttctgcaacactttccatatcctgcggcccaccaaagctcctgggtttgtgtatgcc
tggctggaactgatctctcaccgcatatttattgctaggatgctggcacatacaccccaa
cagaagggctggcccatgtatgctcaactgctgattgacctgttcaagtacctgggtccc
ttcttaaggaatgttgagctcaacaaacctatgcaaattctctacaagggcactctgcgt
gttttgctggtcctcctccatgacttcccagagttcctgtgtgattaccattatggcttc
tgtgatgttatcccacccaactgtatccaactgcggaacctgattctcagtgccttccca
cgcaacatgaggcttccggatccatttactcctaacctgaaggtggacatgttgagtgaa
atcaatattgctccccgtattctcactaatttcactggagtgatgccacctcagtttaag
aaggatttggactcctacctgaagactcgttctcctgtcactttcttgtccgagctccgc
agcaacctgcaggtagggggcgccattttgggtccctggaaacatttgcagcacagcgac
acatcattagaccaggtttctaatgaggcagggaatcgttacaacatccagcttatcaat
gcactggtgctctatgttggaacccaagcgattgctcacatccacaacaagggtagtaca
ccatccatgagcaccatcacacactctgctcatatggacatcttccagaacctggctgtg
gacctcgatactgaaggccggtacctgtttctgaatgccattgccaatcagctgcgttac
ccaaacagtcacactcactacttcagttgcacaatgctctatctgtttgctgaggccaac
actgaggctatacaggagcagataaccagggttctactggagaggttgattgtgaacagg
cctcacccatggggtttacttatcactttcatcgagttgattaaaaacccagcctttaag
ttctggaaccatgactttgtccactgtgcaccagagattgaaaagttgttccagtcggtg
gcccagtgctgcatggggcagaagcaggcacagcaagtgatggaaggcactagtgctagt
tag
DBGET
integrated database retrieval system
