Acipenser ruthenus (sterlet): 117425711
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Entry
117425711 CDS
T07327
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117425711
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117425711
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117425711
mRNA degradation factors
5'-3' decay
Decapping complex
117425711
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40_WDHD1_1st
WD40
Beta-prop_HPS5
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
WDR55
Beta-prop_EML_2
SYCP2_ARLD
EIF3I
Motif
Other DBs
NCBI-GeneID:
117425711
NCBI-ProteinID:
XP_033898809
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All DBs
Position
22:3067754..3086894
Genome browser
AA seq
1396 aa
AA seq
DB search
MASNANIDIEDATQHLRDILKLDRPGHSDNSSESQKKSTSFNGELNGFMGADLIAGGDRG
AMSEMSIHILEDMNMQEKQTICLSGEDSSTCIIISARDVEIVASHDSSINSKARGSNKVK
IQPVAKYDWEHKYYYGNLIAVSNSYLAYAIRGANSIAMIRVLNIGTAERTLLKGFTGGVT
DLAFAHLNSNQLACVDEAGNLFVWQLTEENGKIQDEIIVHVTRPESTPLNGNRRIIWCPF
IPEENEENAEDGCQTLALLHEDRAEVWDLEIIRSNNSSWPMEATDFKEGFITVKGHNARI
SEGALSPDGTVLASASHDGCVKFWQIYIEGQDQPRCLHDWKPHNGKPLSCLLFCDNHKKQ
DPEVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPSLKASLDLSAEYL
ILTDVQRKVLYVMELLQDQEKGRASFTAISEFLLTHPVLSFGIQDVSRSRQRHTEVLPAE
EESESMTAEGSQGPVESKAGVQIKLYCVHTKSLQDVQIWFQPHLSSGNSTCLPPSGSHED
FSFADRLTDVSMEGLGSDKESGRGSPHDLRRISDLPAPADFLSATSDFKPKLMTPDAFMT
PSASAQQQISASPGSSVSTLTAVTGMSSSCISDSVMSRTGEEMTKLSLDSSMTLSNSTGM
QGSPRNNSILIPGLADQLPSKTVQVIPPANPPLSLDLQSIEPLLMPQASPTRERSPDVIS
SASTAMSQDIPEIASETLQRGLAASGGLPAEVLEPTLHSDSMASAASALHLLSPRNRHNS
EHSHHSLDMGSGEAERLSSTPSLLETALSQESAAATAAADNSGSQPWPAAPDITRETRNS
LIDSSREDVNEKHKPSPFHRHTYQLPQHDSQDASAEQSDHDDEVASLASSLGNYGSKSTH
RLPVEWKSSPRGSPKLKRKSKKEEGDVAQARSSDHQMNTELQEELLSLVRCQQREISELR
QSQLELMQRLTNHMDAVQSSIMGHVERVMITQQEQEQRRMERILADGHDHNRQFQEQLSQ
QLSQSVSNTLSNRLDKTVRDEMKKTIPQSVSKSLEPVTGQLSNTIAAKLTAVEGTLKENI
TKMVKSKNTTDAIGRAAADALQGPIQAAYKEAFQSIVLPVFEKGCQSMFQQINDSFKSGT
QEYIQQLESHLKNRKLQEHEVRDPMMVQLQQMIDTFQNTTDQLPSNITASMRSEVQHQLH
ITVGNLQDSILTQVQRIVKGEVSMAMKEQQAAVTTSIMQAMRSAAGTPIPSSHLDYQTQQ
ANILQLLQQGQLNQAFQQALSAADLNLVLYVCETVNSQQVFGQNPCPLIQPVLLSLIQQL
STNLATRTELKISYLEDAVMNLDHGDPVTRDHMSSVLSQVRQKLFQFLQADPHNALSKRA
RRLMMMLQGLINHGMS
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atggcttccaacgccaacatagatatcgaggatgcaacccaacaccttcgggacatcttg
aagctggaccggcccgggcatagcgataactcaagtgaatcccaaaagaagtcgacgtct
ttcaacggagaactcaatggcttcatgggagcagatctcatagcagggggcgacagaggg
gccatgtcggagatgtctatccatatcctagaggacatgaacatgcaggagaaacaaacc
atctgcctctctggagaggacagctccacctgcatcattatatctgccagagatgtggaa
atagtggcaagccacgactccagcatcaacagcaaggccagaggcagtaacaaggtaaaa
atacagccagtggcaaagtatgattgggagcacaagtactactatgggaacctgatagct
gtatccaactcctatctcgcatacgctatcagaggtgcaaacagcattgctatgatccgt
gtgctgaacataggcactgcagagcgcactcttctgaaggggttcactggcggagtgaca
gacctggccttcgctcatctcaactctaatcagctggcctgcgtggatgaggctggaaac
ctgtttgtgtggcagctaactgaggaaaatggaaaaatacaagatgagattatcgttcac
gtcactaggccggagagcaccccattgaacggtaacaggaggatcatttggtgccctttc
ataccagaggagaacgaggaaaatgcagaagatggatgtcagactctggccttgctgcat
gaggacagggctgaagtttgggatttggaaatcattagaagcaacaacagctcgtggccc
atggaagcaactgatttcaaagaaggctttatcactgtcaaaggacacaacgcacgtatc
agtgaaggtgccttgtcacctgacgggacagtccttgcctcagccagtcatgatggatgc
gtcaaattctggcagatctacattgaaggacaggatcaaccgagatgccttcatgactgg
aaaccccacaatggtaaaccactgtcttgcctgctgttttgtgacaatcacaagaagcaa
gaccctgaagttccattctggagattcctgatcacgggtgcagatcagaaccaggagctg
aagatgtggtgcactgtgtcctggacctgcttgcaaactatccgattttcaccggatcct
tttaactccagtgttcttcctagtctgaaagccagtttggacctttctgctgaatacctg
attctgactgatgtacagaggaaagtgctgtatgtaatggagctgctgcaggaccaggag
aagggcagagccagcttcaccgccatctcggagttcctgctcacccaccctgtgctgagt
ttcggtatccaggatgtgagccgcagccgccagagacacaccgaggtcctgccagccgag
gaggagagcgagagcatgactgcggaaggaagccaaggtcctgtggaatccaaagcagga
gtccagataaaattatactgtgtgcacacaaagtcactccaagacgtgcagatctggttt
cagcctcacctgagttctgggaattccacgtgtctgcctccctctggctcacacgaggac
ttcagttttgcagaccgcctgacagacgtgagcatggaagggttgggctcagacaaggag
tcgggccgtggctctccgcatgacctccgcaggatatccgacctgcccgctccagctgac
ttcctgtctgctaccagcgactttaaacccaaactcatgactccagatgcgttcatgact
cccagcgcttcagcacagcagcagatatcggcctctcccggcagcagtgttagcaccctg
accgcagtaaccggaatgagcagcagttgtatcagcgacagtgtaatgtccaggactggt
gaagaaatgacaaaactttccctggatagcagcatgactctcagtaacagcactggcatg
cagggcagccctcgaaacaactctatactaatccccggacttgctgaccagctgccttcc
aaaactgtccaggtgattcccccagctaaccctcccctctccctggacctgcagtccatt
gaacccctcctgatgccccaggcctctccaacccgcgagcgctctcccgacgtcatttcc
tctgcctccacggccatgtcccaggatatccctgagatcgcctccgagaccctgcagcgt
ggacttgctgcttcgggaggcctgcctgccgaagtcctggagcctaccctccactcggac
agcatggcctctgctgcctcggccctgcacctcctctcccccaggaaccggcacaactct
gagcacagccaccactccctggacatgggctccggggaggcggagcggttgtccagcacc
ccctccctcctggagacggctctctcgcaggagagcgcagcggctacagctgcagcagac
aacagcgggagccagccttggcctgctgcccctgatattaccagggagaccaggaacagc
ctgattgacagctcgcgtgaggatgtgaatgaaaagcacaagccttccccattccacaga
cacacctaccaactcccccagcatgacagtcaggatgccagcgcagagcagagtgatcat
gatgatgaagttgcaagccttgcatcctccttaggaaactatggttccaaatccacccac
aggctacctgtggaatggaaatcctctccaaggggttccccaaaattaaagagaaagagc
aaaaaggaggagggggatgttgctcaggcaaggtcatctgatcatcagatgaacactgag
ctacaggaggagctgctgtccctggtgcgctgtcagcagagggagatctcggagctgagg
cagagccagctggagctgatgcagaggctcaccaaccacatggacgctgtccagagctcc
atcatgggccacgtggagcgagtgatgatcacccagcaggaacaggaacaaaggagaatg
gagcggatcctggccgatgggcacgaccacaacagacagttccaggagcagttgtctcag
cagctgtcgcagtctgtctccaacaccctgtccaacaggctggacaagaccgtccgggac
gagatgaagaagaccatacctcagtctgtatccaagagtctggagccagtcacaggtcaa
ctgagcaacacaattgcagctaaactcaccgcagtggagggaacactgaaggagaacata
actaaaatggtgaagtcaaagaacactacagatgccattgggagagcggcagcagacgcg
ttacagggacccatccaggcagcatacaaggaggctttccagagcatagtgttaccagtc
ttcgagaagggctgccagtccatgttccagcaaatcaatgacagctttaagagtggaacg
caggaatatatccagcagcttgaaagccatctgaaaaacaggaagttacaggagcatgag
gttcgggaccctatgatggtgcagctacagcagatgatcgacactttccagaacaccacg
gaccagctgccttccaatatcacagccagcatgcgctccgaagtgcagcaccagctgcac
atcacagttggaaacctgcaggactccatcttgacccaggtccagcgcattgtgaagggt
gaggtgagcatggccatgaaggagcagcaagctgcagtcaccaccagtatcatgcaggct
atgcgctcagctgctgggacgcctatcccgtcctcgcatcttgactaccagacccaacag
gctaacatcctccagctgctgcagcaagggcagctcaaccaggctttccagcaggcactg
tctgctgctgacctgaacctggttctctacgtgtgtgagacggtgaactcccagcaggtt
tttggacagaacccctgtccacttatccagcctgtgctgctgtcactcattcagcaactc
tccactaatctggctaccaggactgaactcaaaatcagttacctggaggacgcagtgatg
aacctggaccacggtgacccggtcactcgagaccacatgagttccgtcctcagccaggtc
cgacagaagctgttccagttcctgcaggcagacccacacaatgcgctgagcaagcgggca
cggcggctcatgatgatgctgcaggggctcatcaaccatggcatgagctaa
DBGET
integrated database retrieval system
