KEGG   Acipenser ruthenus (sterlet): 117426600
Entry
117426600         CDS       T07327                                 
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
  KO
K12828  splicing factor 3B subunit 1
Organism
arut  Acipenser ruthenus (sterlet)
Pathway
arut03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:arut00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117426600
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:arut03041]
    117426600
   03036 Chromosome and associated proteins [BR:arut03036]
    117426600
Spliceosome [BR:arut03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    117426600
 Complex B
    117426600
 Complex C
   U2 SnRNP specific factors
    117426600
Chromosome and associated proteins [BR:arut03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    117426600
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT_EF3_N HEAT_ECM29 Htt_N-HEAT_1 HEAT_2 XMAP215_CLASP_TOG Adaptin_N UNC45-central DUF2298 T4_baseplate
Other DBs
NCBI-GeneID: 117426600
NCBI-ProteinID: XP_033900235
LinkDB
Position
12:complement(38006926..38025422)
AA seq 1325 aa
MAKIAKTHEDIEAQILEIQEKKAALLEGSEEGDGGVGLDSTGYYDQEIYGGSDSRFAGYV
TSIAANEQEDDDEEDSSTSLLGQKKPGYHAPVALLNDIPQSAEQYDPFAEHRPQKIAERE
DEYKGRRRQMIISPERLDPFADGGKTPDPKLHARTYMDVMREQHLTKEEKEIRQQMAEKA
KAGELKVVNGSAASQAAAAAAAKRKRRWDQTADQTPNSASTTPKKVSSWDQADVTSEQTP
GHTPGHTPSESRWDETPGRAKGSETPGATPSSRMWDPTPSHTPAGAATPGRGDTPGHVTP
GHGGATSSVRKNRWDETPKTERETPGHGSGWAETPRTDRGGDSVEETPTPGASKRKSRWD
ETPASQMGSSTPLLTPGKTPIGTPAMNMATPTPGHLMSMTPEQLQAWRWEREIDERNRPL
TDDELDAMFPEGYKVLPPPAGYVPIRTPARKLTATPTPMGGMTGFHMQTEDRTMKTINDQ
PSGNLPFLKPDDIQYFDKLLVEVDESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQI
TDKAREFGAGPLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIE
PLLIDEDYYARVEGREIISNLAKAAGLATMISTMRPDIDNMDEYVRNTTARAFAVVASAL
GIPSLLPFLKAVCKSKKSWQARHTGIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQ
KVRTISALAIAALAEAATPYGIESFDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDA
EYANYYTREVMLILIREFQSPDEEMKKIVLKVVKQCCGTDGVEANYIKTEILPAFFKHFW
QHRMALDRRNYRQLVDTTVELANKVGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNL
GAADIDHKLEEQLIDGILYAFQEQTTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWR
LNNKSAKVRQQAADLISRTAVVMKTCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKA
IVNVIGMHKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRIC
FELLELLKAHKKAIRRATVNTFGYIAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIV
AETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMD
RDLVHRQTASAVVQHMSLGVYGFGCEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRV
AIGPCRMLQYCLQGLFHPARKVRDVYWKIYNSIYIGSQDALIAHYPRVYNDEKNPFVRYE
LEYSL
NT seq 3978 nt   +upstreamnt  +downstreamnt
atggcgaagatcgccaagacacacgaagacattgaggctcagatccttgagatacaggag
aagaaggcagctcttctggagggctctgaggaaggagatggaggagtgggactcgactcc
actggctactacgaccaggagatctacgggggcagcgacagccgcttcgccggctatgtc
acctccatcgccgccaatgagcaggaagatgatgacgaggaagactcctccaccagcttg
ctggggcagaagaagcctgggtaccacgctcctgtggcactgctcaacgatatcccacag
tcagcagagcaatatgatccgtttgcggagcaccgtccccagaagatcgccgagcgggag
gacgagtacaaaggtcgccggcggcaaatgatcatctctcccgagcgactcgaccccttt
gcagacggagggaaaaccccagatcccaaactccatgccagaacgtacatggacgtcatg
cgtgagcagcacctcacaaaggaagagaaagagatccgtcagcagatggcggagaaggcg
aaggcaggggagctgaaggtggtgaacggctctgctgcgtcccaggctgccgctgccgca
gctgcaaaacgcaagcgccggtgggaccagactgcggaccagacccccaacagtgccagc
accacgcccaagaaggtgtccagctgggaccaggcagacgtcacctcagagcaaactcca
ggacacacaccgggacacacaccctccgagagccgctgggatgagacccccggccgggca
aagggcagtgagacccctggagccacccccagctcccgcatgtgggaccccacccccagc
cacacccctgcaggagctgccacgcccggcagaggagacacacctggccacgtcacacca
ggccacgggggagccacctctagcgtgcgcaaaaaccgctgggatgagacacccaagaca
gagagagagacccctggccacggcagcggctgggctgagaccccccgtacggaccgtggt
ggtgactctgtggaagagactcccaccccaggggccagcaagaggaagtcgcgctgggac
gagaccccagccagccagatgggctcctccacccccctgctcaccccgggaaagaccccc
ataggaacccctgccatgaatatggccactcccacgccaggtcacctgatgagcatgact
cccgagcagctgcaggcctggcgctgggaacgtgagatagacgagaggaaccgtccgctc
accgacgatgagctcgatgccatgttccctgaggggtacaaggtcctgccccctccagcg
ggctacgttccaatccgcaccccggcccgcaagctcactgccacccccacccccatggga
ggaatgaccgggttccacatgcagacagaggaccgcaccatgaagaccatcaacgaccag
ccctccggcaacctgcccttcctcaagccagacgacatccagtacttcgacaagctgctg
gtggaggtggatgagtcgactctcagtccagaggagcagaaagaacggaagatcatgaaa
ctgctgctgaaaatcaagaacggcactccaccaatgagaaaggccgcgctccgtcagatc
acagataaagcccgtgaatttggggctggcccactcttcaatcagattctgcccctgctg
atgtcccccacgctggaagatcaggagcgccatcttctggtgaaggtcatcgacaggatc
ctgtacaagctggacgacctggtccggccctatgtgcacaagattctcgtggttattgaa
cccttgttgattgatgaagattactatgccagagtggagggccgagaaatcatctccaat
ttggccaaggctgctggtctggccaccatgatctctaccatgcgccccgacattgacaac
atggatgagtatgtgaggaacacgacggcccgtgccttcgctgtggtggcctcggcgctg
gggatcccctcgctgctccccttcctcaaggccgtgtgcaagagcaagaagtcctggcag
gccaggcacactggcatcaagatcgtgcagcagatcgccatcctcatgggctgtgccatc
ctgccccatctcaggagcctggtggagatcattgagcacggtctggtggacgagcagcag
aaggtgcgcactatcagtgctctggctatcgctgccctggctgaggcagccaccccctac
ggtatcgagtccttcgactccgtgctcaagcccctgtggaagggtattcggcagcacaga
ggcaagggtctggctgctttcctgaaggcgatcggctacctgatccccctgatggacgct
gagtatgccaactactacaccagggaggtgatgctgatcctcatcagagagttccagtct
cccgatgaggagatgaagaagattgtgctcaaggtggtgaagcagtgctgtggcacagac
ggtgtggaagcaaattacatcaagacagagatcctgccggccttcttcaaacacttttgg
cagcacaggatggcgctggacaggaggaattacagacagctggtagacaccacggtggag
ctggctaacaaggtgggcgctgcggagatcatctctcgcatcgtggacgacctaaaggac
gaggcggagcagtaccgcaagatggtgatggagaccatcgagaagatcatgggcaacctt
ggggctgctgacatagaccacaaactggaggagcagcttatcgatggcatcctgtacgcc
ttccaggagcagactactgaggactctgtgatgctgaacggctttggcacagtggtgaac
gcgcttgggaagcgtgtaaagccctacctgccccagatttgcggtaccgtcctgtggcgt
ctcaacaataagtccgccaaagtgcgccagcaagccgcggacctcatttccagaaccgcc
gtcgtcatgaagacctgccaggaggaaaagctgatgggtcacttgggtgtggtgctgtac
gagtacctgggagaggagtaccccgaagtgctggggagcattcttggggcgctcaaggcc
attgtaaacgttatcggtatgcacaaaatgactcccccgatcaaggacctgctgcccaga
ctgacgcccatcctgaagaacaggcacgagaaggtccaggagaactgcatcgacctggtc
gggcgaattgctgaccggggagctgagtatgtctcagccagggagtggatgaggatttgc
tttgagctgctggagctgttgaaggctcacaagaaagccatcaggagagccactgtcaac
accttcggctacatcgccaaggccatcggccctcacgacgtgttggccactctgctcaat
aacctgaaggtccaggagcgacagaaccgtgtgtgcaccaccgtggccatcgctatcgtg
gcagagacatgctcccccttcaccgtgctgccggcgctcatgaacgagtaccgcgtgcct
gagctcaatgtgcagaacggcgtgctcaagtccctctccttcctctttgagtacatcggg
gagatgggcaaggactacatctacgcagtcacgccactgctggaggacgcgctcatggac
agagacctggtgcacaggcagacagccagtgcggtggtgcagcacatgtctctgggtgtg
tacgggtttggctgtgaggactccctcaatcacctgctcaactacgtctggcccaacgtg
ttcgagacctcgccccacgtcatccaggctgtcatgggggcactggaggggctgcgtgtc
gccatcgggccctgccgcatgctgcagtactgcctacagggcttgttccacccagcgagg
aaggtgagggatgtttactggaagatctacaactccatctacatcggctcccaggatgct
ctgatcgcacactacccccgcgtgtacaacgacgagaagaacccctttgtccgctatgag
ctcgagtactccttgtaa

DBGET integrated database retrieval system