Acipenser ruthenus (sterlet): 117426758
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Entry
117426758 CDS
T07327
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain-like
KO
K06823
collagen type XVIII alpha
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
arut04147
]
117426758
00535 Proteoglycans [BR:
arut00535
]
117426758
00536 Glycosaminoglycan binding proteins [BR:
arut00536
]
117426758
Exosome [BR:
arut04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117426758
Proteoglycans [BR:
arut00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
117426758
Glycosaminoglycan binding proteins [BR:
arut00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117426758
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
DUF959
Laminin_G_3
DUF1554
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
117426758
NCBI-ProteinID:
XP_033900592
LinkDB
All DBs
Position
12:22654962..22710331
Genome browser
AA seq
1670 aa
AA seq
DB search
MAKFGNMLGCSLLLLACVSYSDAQWGWWPFGKDTQATTQTITTQENQGLQSTTSEATSLE
TTTVILQAHEEGHGLLSVSTRSPDSETASPTTGPPPPGPATEENLAGVGAEILNVAEGIL
SFVQTWDQKLTAEANDGAVEVSTSPAEDTETTADVRKMDRGTTLPIARQVTEQPKDIATF
LPVAQPWVERHLLENGTTTLHTISVLENVPDVNLESSGEGESGSSMGESQFEAGQLEMGN
LTSSFSNSTSREFLQVGNISDWRDSVTNESLHDGKAVAGFLKMQLSDNLTDFANWTTAGN
GTSNTDDVGVSLLQLIGDPPPEEITKIYGPDNSPGYVFGPDANTGQLARAHLPSPFYRDF
SLLFHLQPTTPKAGVIFSVTDPTQASMYVGVKLSAVQEGKQKVLFYYTEPGSQTSYQAAA
FNVPSLANRWTRFAISVEGEEVFFFLDCEESEATRFERSPDEMELESGAGVFVGQAGGAD
PDRFVGVIAELRVVGDPRAAERHCDEEGDDSDAASGDFGSGYEERPKIETVTPPAQRPLK
QPPVTAPSTGRKEKLSPQITAETAGKQIVDSQTHSEVKSQPGVLGQAGPVGPAGPKGERG
EKGDQGGRGPQGAKGDSIGAAGGTAGPRGEKGENGMKGSAGFGYPGKKGDKGDPGPPGPP
GPPGPAAERLERGDGSAVEQIVGARGPPGPAGPPGPKGTDGEPGDPGEDGIAGPAGPPGF
PGTPGDPGQKGEKGDTGEGKPGPRGPPGLPGPAAPRSQTFFDMEASGFPDLESIRGPQGL
PGIPGPPGPPGPPAAQPVSGHPASIGPPGPRGIDGKDGIPGVQGPPGPPGPPGNNGQPGL
AGPRGEKGDPGDLGLPGAVGEKGSKGDVGSPGISGQTGLAGLPGPMGPVGQPGPPGPPGP
GFPVGFDDMEGSAFSSINGPGVRGPDGRPGVPGPPGLPGIPGNNGLPGLPGAKGEAGSPG
SSGVDGQPGLDGFPGLEGPKGDKGDRGEKGEQGRDGVGIPGRPGLPGPPGQIIYQPGNHE
GNIAPGTEGIQGPPGKAGFPGPRGPKGDRGDSGPPGYGIKGEKGEPAAIIGPDGNILSSA
FLGGVGGEKGDPGIPGPVGPVGPYGRPGQKGEIGLPGRPGRPGINGFKGEKGEPSDVSHG
YAVSGPPGPPGPPGPPGPPGQFTERYDFNEGVPRYPGLQGPKGERGFPGYTGEKGEQGQP
GLPGQPGGLPDFDIYALKRELKGEQGDKGPQGEKGEPGGGYYDPRYSAPQGPLGQPGSPG
LPGPKGDSIRGPPGPQGPPGTPGVGYDGRPGQPGPPGPPGPPSLPGASRQSISIPGPPGP
QGPPGPPGHSSGLTILRTYQTMITTARGLPEGTMVFVLDKADIYIRVRDGFRQVLLGDYT
PFFGGGVLENEVAAVQPPPVVHFSQGHSPNSGAGHISQNEPVNRQPVQQPHRPHPPHQPD
HGHVVYPSTPERQPAGRNPARPEFGNPSYPSPPQRRPSQPENTQPAGHEHSTGPALHLIA
LNAPQTGDMRGIRGADFQCFQQARAVGLTGTFRAFLSSKLQDLYSIVRRADRATLPIVNL
RDEVLFDNWESLFDGSDAQVKPNVAVYSFDGRDVLRDNTWHQKMVWHGSNNKGHRLTDNY
CETWRTGDQAVTGFASSIQAGRLLQQRPSSCTSSHIVLCIENSYILQSKK
NT seq
5013 nt
NT seq
+upstream
nt +downstream
nt
atggctaagtttgggaacatgttgggttgctccctgctcctgttagcttgtgttagttac
tctgatgcccagtggggatggtggccatttggcaaagacacccaggcaactacacagact
ataacaacccaggagaaccagggattacagagtactactagtgaggctacaagcctggag
accaccacggtcatcctgcaagcccacgaggaaggacatggacttttgagtgtttcaaca
agaagccctgattcagaaacagcatccccaactacaggaccaccaccaccaggaccagcg
accgaagagaaccttgctggagtcggggctgagatactgaacgtggctgaggggatcctc
agctttgtccagacgtgggaccaaaaactgacagcagaagcaaacgacggtgcagtagag
gtttctacctcccctgctgaagacacagagacaacagccgatgtacgcaagatggacaga
ggcacaactttgcccattgctaggcaggttacagagcaaccaaaggatatagccacattt
ctaccagttgcccaaccttgggtggaacgccacttgctagaaaatggtactacaaccctt
catacgatatcggtgttggagaatgtaccagatgttaatttggagtcgtcgggggaaggg
gagagtgggtcctcaatgggagagagccaatttgaagctggacaactggaaatgggaaac
ctcacatcttcttttagcaatagcacaagcagagagtttttgcaagtgggcaatatctcg
gactggcgggattcggtgaccaatgagagcttgcatgatgggaaagcggtggcaggcttt
ttaaagatgcaactatccgacaatttaacagactttgccaattggacgactgcagggaat
ggtactagcaacacggatgatgtaggtgtatccttactccagttgataggcgacccgcct
ccggaagagatcaccaaaatctacggtccagacaacagccctggctatgtattcggccca
gacgccaacacaggccagctggctcgcgctcaccttcccagccccttctaccgggacttc
tcgctcctcttccacctgcagccgaccacccccaaggctggcgtgatcttctctgtcaca
gaccccacacaggcatccatgtacgtgggtgtaaagctgtccgccgtacaagagggcaag
cagaaggtcctcttctactacacagagccaggatcccagacctcctaccaggcggcagcc
ttcaatgttccgtctctagccaaccgctggacgcgcttcgccatcagtgtggagggtgaa
gaggtgttcttcttcttggattgtgaggagtctgaagcaacccgtttcgagcgttcaccc
gacgagatggagctggaaagtggcgcaggggtctttgttggtcaggctggaggagcagat
ccagaccgatttgtgggtgttattgctgagctcagggtagttggagaccccagagctgct
gagagacactgtgatgaagagggagatgattctgatgctgcctctggtgattttggaagc
gggtacgaggagagacctaaaattgaaacggtgacacctcctgcccagagaccattgaaa
cagcccccagtgacagcgccctctacgggaaggaaggagaagctctcacctcaaatcact
gctgagactgcgggaaagcagatagtcgactctcaaactcattctgaagtgaaatcccag
ccaggtgtccttggtcaagctggacctgtaggcccggccggtcccaaaggagaacggggg
gagaaaggcgatcaaggtggaagagggccccagggcgcaaaaggagacagcataggggct
gcagggggcactgctggccctcgtggtgagaagggagaaaatggcatgaagggaagtgct
ggctttggttaccccggcaagaaaggagacaagggtgaccctggcccccctggacctcct
ggtccccccggcccagccgcggagcggttggagcgtggagatggcagtgccgtggagcag
atagtgggagccagaggaccccctggaccagcaggcccaccaggacccaaaggaacagac
ggagagcctggtgaccctggtgaagatggcattgcaggtcctgctggccctcctggcttt
cctggaactccaggggaccctggtcaaaagggcgagaagggtgacactggtgaaggcaaa
cctggaccaagaggaccccctggcttgccaggaccagcggcaccccgctcacagaccttt
tttgacatggaagcttccggattccctgatctggaaagcattcggggcccccaagggctt
cctggtattccgggccctcctggccctcctggcccccctgcagcccaacctgtgtctgga
cacccagcttcaattgggccacctggaccaagagggattgatgggaaggatggcattcct
ggtgttcaagggcccccaggccccccaggtcctccaggaaataatggccaaccaggactg
gctggacccagaggagaaaagggtgatccaggcgatttgggacttcctggagctgttggt
gaaaagggttcaaagggtgatgtgggttcccctggtatttcagggcagacaggattggct
ggtcttcctggaccaatgggaccggttggacagcctggcccccctggacctccaggccca
ggcttcccagtgggctttgatgatatggaagggtcagcattcagttcaataaatggtcca
ggagtcagagggccagatggacggccgggtgttcctggtccacctggtttgccaggcata
ccgggtaacaatggattgcctggacttccaggagcaaagggagaagctgggtctccaggg
tcctcaggggttgatggacagccagggttagatggattccccggcctggaaggaccaaag
ggtgacaaaggggacaggggcgaaaaaggcgagcagggtcgagatggggttggaattcct
ggtcggcccggcctacctggacctcctggacagatcatctatcagccaggcaaccatgaa
ggcaacattgctccaggcacagagggaatacaaggcccgcctggtaaagcaggtttccca
ggccccagggggccaaagggcgacagaggagactcgggaccaccaggatatggaataaag
ggagaaaagggagaacctgctgccattatcggccctgatggaaatatcctgagcagtgca
tttcttgggggagttgggggagaaaagggtgacccaggaatccctggaccagtcggccct
gtgggtccttatggtcgtcctggccagaagggtgaaattggtttacctggcaggcctggt
cgtcctggtattaatggatttaaaggtgaaaagggggagccaagtgatgtcagtcacggt
tacgctgttagtggtccccctggtccccccggcccccccggcccccctggtcctccagga
caattcaccgaacgctatgactttaatgaaggtgtaccaagatatccaggtttacaaggt
cccaagggagagaggggcttcccaggctacacaggagagaaaggagagcaagggcagcct
ggcctgcctggacaaccaggtggtctcccagactttgatatttatgcattaaagagagag
ctgaagggagaacaaggtgacaaggggccacagggtgagaagggagagccaggtggtgga
tactatgatcctcgttattctgcacctcaaggcccccttggacagccgggcagccctgga
ctgccgggtcctaagggcgactctatccgaggccctcctggtccccagggacctccaggg
accccaggggtcgggtacgatgggcgtccaggacaaccagggccgcctggcccacccgga
cctccatcactgcctggagcttccaggcagagtatcagcattccaggcccacctggaccc
caaggcccaccaggccctcccggacactcctcagggcttaccattttgaggacttaccaa
accatgatcaccacagcgcgaggactgccagaaggaactatggtctttgtcttggacaag
gcagatatctatatccgagtgcgggatggattccgtcaagttctgcttggggactacaca
ccattctttggaggcggtgtccttgaaaatgaagtggccgcagtgcagccaccaccagta
gtccatttctcccaaggccattccccaaacagcggggctggacacatttcccagaacgaa
cccgtaaacaggcagccagtgcaacaaccacaccggccgcatccaccccaccagccagac
cacggccatgttgtctaccccagcactccggagcgacagccagcagggaggaacccagcg
aggccagaattcggcaatcccagttatcccagccccccccagcgaagacccagccagcct
gagaatacacagcctgcaggtcatgaacatagcacaggccctgctctccacctgatagcc
ctgaacgctccccagactggagacatgcgtggaatccgtggggcagacttccagtgcttc
cagcaagcccgagcggtgggactgactggcactttccgtgccttcctgtcttccaaactc
caggacctctacagcatcgtgcggagagctgacagagccacattacccatcgtcaatctc
agggatgaggtgctgtttgataactgggagtctctgtttgatgggtcggatgctcaggtg
aagcccaatgttgctgtctactcctttgatgggcgggatgttctcagagacaacacatgg
caccaaaagatggtctggcacgggtcgaacaacaagggacatcggctcactgacaattac
tgcgagacgtggaggactggcgaccaggccgtgacaggctttgcttcctccattcaggcc
ggcaggcttctccagcagcgtcctagcagctgcaccagctcccacatcgtcctgtgtatt
gagaacagctacatcttgcaatccaaaaaataa
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integrated database retrieval system
