KEGG   Acipenser ruthenus (sterlet): 117427026
Entry
117427026         CDS       T07327                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
arut  Acipenser ruthenus (sterlet)
Pathway
arut03030  DNA replication
arut03410  Base excision repair
arut03420  Nucleotide excision repair
arut03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:arut00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117427026
   03410 Base excision repair
    117427026
   03420 Nucleotide excision repair
    117427026
   03430 Mismatch repair
    117427026
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:arut03032]
    117427026
   03036 Chromosome and associated proteins [BR:arut03036]
    117427026
   03400 DNA repair and recombination proteins [BR:arut03400]
    117427026
DNA replication proteins [BR:arut03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    117427026
  DNA Replication Termination Factors
   ELG1-RFC complex
    117427026
Chromosome and associated proteins [BR:arut03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    117427026
DNA repair and recombination proteins [BR:arut03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     117427026
  Check point factors
   HRAD17(Rad24)-RFC complex
    117427026
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_11 AAA_22 AAA_14 RuvB_N AAA_16 AAA_assoc_2 ResIII DEAD AAA_24 PhoH DUF815 AAA_7 ATPase_2 AAA_19 AAA_5 AAA_30 TIP49 Thioredoxin_6 nSTAND3 DNAX_ATPase_lid Mg_chelatase AAA_2 bpMoxR RNA_helicase
Other DBs
NCBI-GeneID: 117427026
NCBI-ProteinID: XP_033901260
LinkDB
Position
12:complement(3034191..3042724)
AA seq 334 aa
MTSTCKSQLQSRNLPWVEKYRPQTLQDLISHQDILGTIQRFISEERLPHLLFYGPPGTGK
TSTILACAKQLYKEKEFNSMVLELNASDDRGIDVVRGPILSFSSTRTIFNRGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQEQMVPRL
EYVIEQESVDVTPDGMKAIVTLSNGDMRRSLNILQSTNMAYGKVSEDTVYTCTGHPLKSD
IANILDWMLNKDFAAAYNNIMELKTLKGLALHDILTEIHLLVHRVDFPASVRIHLLIKMA
NIEHRLASGTSEKIQLSSMIAAFQVARDMVAAEA
NT seq 1005 nt   +upstreamnt  +downstreamnt
atgacttcaacttgcaaaagccagctgcagtcgaggaaccttccgtgggtggaaaagtat
cgaccgcagacgctgcaggacttgatttcgcatcaggacattctaggaacaattcagcgc
tttatcagtgaagagaggctcccgcatctcctgttttatgggcctcccgggactgggaag
acctcgaccatcctggcttgtgccaagcagctctacaaggagaaagaattcaactccatg
gtcctggagctcaatgcatcagatgacagaggtattgatgttgttcggggtccgatcctc
agcttctccagcaccaggaccatctttaatagaggatttaaactagttatattggatgaa
gcagacgccatgacccaggatgctcagaatgctttgagaagagtgattgagaagttcaca
gagaacaccaggttttgcttgatctgtaactacttgtcaaagatcattcccgcactgcag
tctcgatgcacgaggttccggttcggccccctgtcccaggagcagatggtgcccaggctg
gaatatgttatagagcaggaaagtgttgatgtaaccccagatggaatgaaggccattgtg
accctgtctaatggtgacatgcgtcgatctctcaacattttacagagtaccaacatggct
tatggaaaagtgagtgaggataccgtgtacacgtgcacaggtcaccctctgaagtcggac
attgctaacattctggactggatgctgaacaaggatttcgccgcggcgtacaataacatc
atggagcttaaaacattgaagggtttggcgttgcatgacatcctgacagagatccaccta
ttggtacacagagttgattttccagcttcagttcgaatccatttactcatcaagatggca
aacattgagcacagactggcttctgggacgagtgagaagatccagctgagctccatgatc
gcagcgtttcaggtggcccgggacatggtggcagctgaagcctga

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