KEGG   Acipenser ruthenus (sterlet): 117427122
Entry
117427122         CDS       T07327                                 
Name
(RefSeq) collagen alpha-1(VI) chain-like
  KO
K06238  collagen type VI alpha
Organism
arut  Acipenser ruthenus (sterlet)
Pathway
arut04510  Focal adhesion
arut04512  ECM-receptor interaction
arut04518  Integrin signaling
arut04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:arut00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    117427122
   04518 Integrin signaling
    117427122
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    117427122
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    117427122
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:arut04147]
    117427122
   00536 Glycosaminoglycan binding proteins [BR:arut00536]
    117427122
Exosome [BR:arut04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   117427122
Glycosaminoglycan binding proteins [BR:arut00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   117427122
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   117427122
SSDB
Motif
Pfam: VWA Collagen VWA_2 VWA_3 DUF1194 vWA-TerF-like VWA_CoxE Piwi
Other DBs
NCBI-GeneID: 117427122
NCBI-ProteinID: XP_033901407
LinkDB
Position
12:complement(19300362..19359284)
AA seq 1012 aa
MTLKAIVLTFLQLCLIWTGSQSQTPTKALYYKDCPVDLFFILDTSESVALRVKPFGSYVD
EVKDFTVSFIEQLKASYYRCDRSLKWNAGALHYSDEVKMIKELSSLPDQKVDLNKRVRDV
QYIGKGTYTDCAIKRGTEELLVGGSHRRENKYMIVVTDGYPLEGYKEPCGGLEDAANEAK
HHGIKVFAVAISPSHLETRLNVIATDNSYRQNFTATGNIQQQKDETIRNIIDVIVKESEQ
VCCSFDCQPPRGPAGEAGTSGFGGESGRPGLPGGKGEAGDPGRLGDIGPIGYQGMKGDKG
GRGEKGERGNKGYKGEKGQHGIDGIDGKKGEAGFPGLPGCKGSPGLDGVSGGSGPKGDPG
PYGTKGGRGEKGRDGERGRPGNSGNLGNKGEPGVRGVNGDKGERGDEGEPGPDGPRGEKG
SLGERGAPGTPGARGPRGDLGESGPPGEPGREGSIGLNGDPGESGPPGPKGYKGDEGPPG
PEGVKGPKGTKGAPGDPGLMGERGEDGAPGNGTEGFPGFQGYPGARGDPGTNGTKGYPGP
KGDDGEPGDPGADNDVSGPPGPKGAKGHRGQEGPSGPVGPPGPPGADECEILDIIMKMCS
CCECKCGPLDLMFVLDSSESIGMQNFQLSKDFIIKVIDRLGRDERVKFDENESRVGVVQY
SHKQTEELVAMGSADIKSIQDLKEAVKNLKWIAGGTFTGSALSFSRTNLLDRFRLENRFA
LVLTDGRSDTLRDSTPLNELCAVNTQVVAVGVGDIFKKQPNTEQLGQITCSRGIILQRDN
YAELLEDSFLQNLTAHLCQEKKCPDYTCPISFTSSADITILMDSSTSVGHRNFVTKKQFV
KRLAERFLMAKKPSQATVRVSVVQYSGSQQQSVEVPFSQNYTELASGIEQVQFLNSATDV
TAALDYVISQYRGARANANKKVLIFSDGRSQGISEEVIQKSVAEARAAGIEIYVLAVGSQ
VNEANLRLLVSDRKGIYNVAYGARHLFRVSDYPSLLRGVFYQTVSRKISLIS
NT seq 3039 nt   +upstreamnt  +downstreamnt
atgacgctcaaagcaattgttctaacttttttacaactctgtttaatatggactggatcg
caatctcagacgccaaccaaggctttgtactataaagactgccctgtggatctgtttttc
atcctggacacctcggagagtgtggctctgcgggtgaaaccttttggctcctatgtggac
gaggtgaaggacttcactgtctcgttcatcgagcagctcaaagccagctattaccgctgc
gatcgcagtctgaagtggaatgcaggcgccttgcactacagtgatgaagtcaagatgatc
aaagagctaagctcactgccggaccagaaagtagacctgaacaagagagtgagagatgtg
cagtacattggcaagggcacctacaccgactgcgccatcaagaggggcacagaggaactg
ctggtcggtggttcccatcgccgggagaacaagtacatgatcgtggtgactgacgggtac
cctctggagggttataaagagccctgtggaggcctggaagatgctgccaatgaagccaaa
caccatggcatcaaggtcttcgccgtcgccatctctcccagtcacttggaaaccaggctg
aatgtaattgcaactgacaacagctacaggcagaatttcactgcgactgggaatatccag
caacagaaagatgagaccatccgcaacattatcgacgtcatcgtcaaagaatcagagcaa
gtgtgctgttcctttgactgccagccaccaagaggtccagcaggagaagctggaacatca
ggatttgggggtgaatcaggaagaccaggcttgcctgggggaaagggtgaagcaggagac
cccggaagactgggtgacattggacctatcggttaccaaggcatgaagggtgacaaaggg
ggaagaggcgaaaagggggagagaggcaacaaaggttacaagggtgagaagggacagcat
ggaattgatggaatcgatggtaaaaagggtgaagctgggtttcctggacttcctggctgc
aaaggatccccaggacttgatggtgtgtcgggaggctcaggacccaagggagaccccggg
ccctatggtaccaaaggaggcaggggtgagaaagggcgtgatggagaaagaggaaggcca
ggaaacagcggaaatcttggcaacaagggggagccaggggtgagaggagtgaatggagac
aaaggagaaagaggtgatgagggtgagccaggccctgatggacccagaggtgaaaagggc
agtctaggagaaagaggagcaccaggaacaccaggagcaagaggacctcgaggagacttg
ggcgagtcaggacctccaggggaacctggacgagaagggtccatcggactgaatggagat
ccgggtgaatcaggacctccaggaccaaaaggctacaagggagatgaaggacctcctgga
ccggagggggtcaaaggaccaaaaggaacgaaaggggcacctggagatcctggtctgatg
ggcgagaggggggaagacggggctccaggaaacggaactgaaggattccccggcttccaa
ggttacccaggtgcaagaggcgatccaggcactaatggcaccaaaggatacccaggacca
aagggagatgatggggagcctggggaccccggtgcagataatgatgtttctgggcctcct
ggaccaaagggtgccaaaggacaccgagggcaggaaggacctagcggaccagttggacct
ccaggcccaccaggcgctgatgaatgtgaaatcttggatataatcatgaagatgtgctcg
tgctgtgaatgtaagtgtggccccctggacctcatgtttgtcctggacagttcagagagt
atcggcatgcagaacttccagctgtccaaagacttcataatcaaagtgattgaccgactg
ggcagagacgagagagtcaagtttgatgaaaatgagtcccgcgtcggagtggttcagtac
agccacaaacagacagaggaactcgttgctatgggcagcgcagacatcaagtccatccaa
gatttgaaagaggctgtgaagaatctgaagtggattgctgggggaaccttcactgggtca
gcactgagcttctccaggaccaatcttctggatcggttcaggctggagaatcgattcgcc
ctggttctgacagacggacgatcagacacattgcgggactccacccccttgaatgagctg
tgtgcagtcaacacccaggtggttgccgttggcgtcggggacattttcaagaagcagccc
aacacagagcagcttggacagatcacctgctcgcgtgggatcatcctacagagggacaac
tatgcagagctgctggaggactccttcctgcagaacttaacagcacacctctgccaagaa
aagaagtgcccagactacacgtgtccaatctcctttacgtcttcagctgacatcaccatc
ctgatggacagctccaccagcgtcgggcaccgcaacttcgtaaccaagaagcagtttgtg
aagcggctggcggagcgcttcctcatggcaaagaagccctcccaggcgacggtgcgcgtg
tcagtggtgcagtacagcggcagccagcagcagagtgtggaggtgcccttctcccagaac
tacactgagctggcctccgggatcgagcaggtccagttcctcaactctgccacggacgtg
acagcagcactggactatgtgatctcgcagtaccggggtgctcgggccaatgccaataag
aaggtcctgatcttctctgacgggcgctcgcagggcatctccgaagaggtgatccagaag
agcgtggcagaggcaagggcagcgggcatcgagatttacgtgctggccgtgggcagccag
gttaatgaggccaacctgcgtctcctagtctcagataggaagggaatctacaacgtggcc
tacggagcgcgccacctttttagagtgtctgactacccctctctgctgagaggggtcttc
tatcaaacagtatccagaaaaatctctctgatcagctga

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