Acipenser ruthenus (sterlet): 117427687
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Entry
117427687 CDS
T07327
Name
(RefSeq) LOW QUALITY PROTEIN: DIS3-like exonuclease 1
KO
K18681
DIS3-like exonuclease 1 [EC:3.1.13.-]
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117427687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117427687
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
117427687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_Dis3
CSD2
Rrp44_CSD1
Rrp44_S1
OB_HELZ2
Motif
Other DBs
NCBI-GeneID:
117427687
NCBI-ProteinID:
XP_034757441
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All DBs
Position
19:9643398..9656755
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AA seq
1047 aa
AA seq
DB search
MLLKTERTLHLKSSRGKTVRVVREHYLREHVPCFSSLCQASCHNDGKLLPGNVTHYIVPD
WKVLQDFLEILEFPALRGVIFTQTACQSVQRQKGRKQYNRLRSLLKDARHECILFSNEFQ
RYSYCPREKGEAMEKWQTRCIYYAAVWYYHHLAGQKPLVVITEDQDAIEKYGSENKDIYV
ISIKDYLEGFWPDLKAAHELYESIVQSLRERESESQEKEYAEHLPVEILQAGIKSGRYIQ
GTLNVNKYRAQVEAFVRIQGSANKNTELSSDVLVCGGKQRNRALHGDVVAVELLPRSEWR
GRATALSQSEGEDRLAKELQSQPMPTGTVVGIIQRNWRDYVVTFPPKEEVQSQGKNSQKI
LVTPWDYRIPKIRISTQQAKALQDHRVVARIDSWESTSLYPNGHFVRVLGKAGDLETEMA
AILVENNIQVPPFSEAQMREMPVNNPESPWRVESEQEPERLDLRETHLVFSIDPQGCEDV
DDTLSVRRLANGNVELGVHIADVMHFVKLNSYTDLEARARATTYYLADRRYDMLPPILSA
DLCSLLGSVDRYAMSVMWELDKSSYEVKRVWYGRTIIRSSYKLFYEAAQALLDGDWSVVE
QIPELAGLGGETRQEKLDQLVWAIGSLADIARHLRAKRDRGGALELEGVEVRVQLDAQKN
IAALVPRQPLEVHETVAECMILANHWVAKKIWERFPHQALLRHHPXEFFTELVECAKAKG
FTIDTRSNKSLADSLDRAVDPADPLVNKLLRFMATQAMSNALYFSTGAYPEEEYYHYGLA
LERYTHFTSPIRRYADIVVHRLLMAAILRDKGAELRETPASNKELEELAQHINSKNKAAQ
HAQKQSTELFQCMYFKDKDPVTDERCIADAVIYSIRANGLLVFVPRYGIKGAVYLKNKEG
LVVCVNPDGSCEWKPGTLKRFQDRISSTTADGSETFPLFQHITVRISVQASRSHSESIRM
EIISNKPHKASDPQLHCDTPHPARADLVREVIRSAEEAQQAEEQASRAALAGENQEYCQT
QGKSLYSLLEEIRELALLHVSAASLTP
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgctgttaaaaaccgaaagaacccttcacttgaagagctcccggggaaagacagttcga
gtcgtccgggagcactatctgagagaacacgtcccttgctttagttctctgtgtcaggct
tcatgtcacaacgatggcaagcttcttccaggtaacgtgacccattacatcgtcccggac
tggaaggtgctgcaggacttcctagagattctggagtttccagcgctgaggggcgtcatc
ttcacgcagaccgcctgccaatcagtccagcgccagaaaggacgcaagcaatacaaccgt
ctgcgtagtttgctaaaggatgctcgtcatgagtgcattctgttctcaaatgaattccag
aggtattcctactgcccccgggaaaaaggagaggctatggagaagtggcagactagatgc
atttactacgctgcagtgtggtactaccaccacctagcaggacagaaacctttggttgta
ataacagaagaccaggatgccattgaaaaatacgggagtgaaaataaagatatttacgtc
atctctattaaggactacctggagggtttctggccagacctgaaggctgcccacgagctg
tacgaatcgattgtccagtctctgcgggagagggagagcgagagtcaggagaaggagtac
gcagagcacctgcctgtggagatcctgcaggcagggatcaaatccgggcgatacatccag
ggcacgctcaatgtaaacaagtatagagcacaagtagaagcctttgttcgcatacaggga
tctgcaaacaaaaatacagagctgagcagcgacgtcctggtgtgcggcgggaagcagcgg
aaccgcgcgctgcacggggatgtggtggcggtggagctgctgccacggagcgagtggagg
ggcagggcgacggcgctgagccagagcgagggcgaggacaggctggcaaaggagctgcag
agccagcccatgcccacaggtacggtggtgggcattattcagaggaactggcgggattac
gtggtaacctttccccctaaagaagaggtccagtcccagggcaagaattcccaaaagatc
ttggtgaccccctgggattatcggattcccaaaattcggattagcacgcagcaagccaag
gcgctgcaggaccaccgagtggttgcacgcatcgactcgtgggagtccacttcgctctac
ccgaacggtcacttcgtcagagtgctggggaaagctggcgacctggagacagagatggcg
gccattctcgtggaaaacaacatacaggtccctccgttctctgaagcccagatgcgtgag
atgcctgtgaataacccagagagcccgtggagggtggagtcggagcaggagccggagaga
ctggacctgagggagacgcacctggtcttcagcatcgacccccagggctgcgaggatgtg
gacgacacactgtctgtgcgcaggctggccaacggcaatgtggagctgggcgtgcacatc
gccgacgtcatgcacttcgtcaagctaaactcctacactgacctggaggccagagccagg
gctaccacgtactatttagctgatcgccggtatgatatgctgcctcccatcctgagtgct
gacttgtgctctcttctcggcagtgtggataggtatgccatgagtgtaatgtgggagctg
gataagagctcttacgaggtgaagcgggtctggtacggccgcacgattatccgctcctcc
tacaagctgttctacgaggcagcccaggctctgttggatggggactggagcgtggtggag
cagatccctgagctggctgggctgggcggagagacgaggcaggagaaactggaccagctg
gtctgggccattggcagcttggcggacattgcgcgccacttgagggccaagcgggacaga
ggaggtgcgctggagctggagggcgtggaggtgcgcgttcagctggacgcccagaagaac
atcgccgccctggtgcccaggcagcccctggaggtgcacgagaccgtggcagagtgcatg
atcctggccaatcactgggtcgccaagaagatctgggagcgtttccctcaccaggccctg
ctccgccaccaccccncagagttcttcactgagctggtggagtgcgccaaggccaagggc
ttcaccatagacacacgctctaacaagtccctggcagactccctggacagggctgtggac
cctgctgacccgcttgtcaataagctcctgcgcttcatggctacacaggccatgtctaac
gccctgtacttctccaccggagcgtaccctgaggaggaatactatcactacggcctggct
ctcgagcggtacactcacttcacctccccgatccgacgctacgccgacattgtggttcac
agactgctgatggcggccattctgagagataagggggcggagctccgggagaccccagcc
agtaacaaagagctggaggagctggctcagcatatcaacagcaagaacaaggctgctcag
catgcacagaagcagtccacagaactgttccagtgcatgtacttcaaagataaggaccct
gtaacagacgagcgctgcattgcagatgctgtgatctattcaatacgggctaatggcttg
ctcgtttttgttccaaggtatgggattaaaggagctgtctatctgaagaacaaggagggc
ctggtggtgtgtgtgaatcctgatggaagctgcgagtggaagcccggaactctcaagaga
ttccaggacaggatcagctcgaccacagcagacgggtcagagaccttccccttgttccag
cacatcactgtaagaatatccgtgcaggcatctcgatcccattcggaaagcatcagaatg
gaaataattagcaacaaacctcacaaggcgtcggacccacagctccactgcgacactccg
caccctgccagagcggacctggtgagggaggtgatccgctctgcggaggaggcacagcag
gctgaagagcaggcgagcagggctgcactggcaggggagaaccaggagtactgtcagact
cagggaaagagcttgtactccctgctggaggagatcagagagctggccctgctgcatgtc
tcagcggcttcacttacaccctga
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