KEGG   Acipenser ruthenus (sterlet): 117428002
Entry
117428002         CDS       T07327                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
arut  Acipenser ruthenus (sterlet)
Pathway
arut03030  DNA replication
arut03410  Base excision repair
arut03420  Nucleotide excision repair
arut03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:arut00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117428002
   03410 Base excision repair
    117428002
   03420 Nucleotide excision repair
    117428002
   03430 Mismatch repair
    117428002
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:arut03032]
    117428002
   03036 Chromosome and associated proteins [BR:arut03036]
    117428002
   03400 DNA repair and recombination proteins [BR:arut03400]
    117428002
DNA replication proteins [BR:arut03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    117428002
  DNA Replication Termination Factors
   ELG1-RFC complex
    117428002
Chromosome and associated proteins [BR:arut03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    117428002
DNA repair and recombination proteins [BR:arut03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     117428002
  Check point factors
   HRAD17(Rad24)-RFC complex
    117428002
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 RCF1-5-like_lid AAA_11 AAA_22 AAA_14 AAA_lid_RFC1 RuvB_N AAA_assoc_2 ResIII DEAD AAA_16 DUF815 PhoH AAA_7 AAA_24 ATPase_2 AAA_19 AAA_5 TIP49 AAA_30 nSTAND_NTPase5 Thioredoxin_6 nSTAND3 DNAX_ATPase_lid AAA_2 bpMoxR RNA_helicase
Other DBs
NCBI-GeneID: 117428002
NCBI-ProteinID: XP_033902382
LinkDB
Position
19:26767009..26775481
AA seq 334 aa
MTSTCKSQLQSRNLPWVEKYRPQTLQDLISHQDILGTIQRFISEERLPHLLFYGPPGTGK
TSTILACAKQLYKEKEFNSMVLELNASDDRGIDVVRGPILSFSSTRTIFNRGFKLVILDE
ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQEQMVPRL
EYVIEQESVDVTPDGMKAIVTLSNGDMRRSLNILQSTNMAYGKVSEDTVYTCTGHPLKSD
IANILDWMLNKDFAAAYNNIMELKTLKGLALHDILTEIHLLVHRVDFPASVRIHLLIKMA
NIEHRLASGTSEKIQLSSMIAAFQVARDMVAAEA
NT seq 1005 nt   +upstreamnt  +downstreamnt
atgacttcaacttgcaaaagccagctgcagtcgaggaaccttccgtgggtggaaaagtat
cgaccgcagacgctgcaggacttgatttcgcatcaggacattctgggaacaattcagcgc
tttatcagtgaagagaggctccctcatctcctgttttatgggcctcccgggactgggaag
acctctaccatcctggcttgtgccaagcagctctacaaggagaaagaattcaactccatg
gtcctggagctcaatgcatcagatgacagaggtattgatgttgttcggggtccgatcctc
agcttctccagcaccaggaccatctttaatagaggatttaaactagttatattggatgaa
gcagacgccatgacccaggatgctcagaatgctttgagaagagtgattgagaagttcaca
gagaacaccaggttttgcttgatctgtaactacttgtcaaagatcattcccgcactgcag
tctcgatgcacgaggttccggttcggccccctgtcccaggagcagatggtgcccaggctg
gaatatgttatagagcaggaaagtgttgatgtaacccccgatggaatgaaggccattgtg
accctgtctaatggtgacatgcgtcgatctctcaacattttacagagtaccaacatggct
tatggaaaagtgagtgaggataccgtgtacacgtgcacaggtcaccctctgaagtcggac
attgctaacattctggactggatgctgaacaaggatttcgccgcggcgtacaataacatc
atggagcttaaaacattgaagggtttggcgttgcatgacatcctgacagagatccaccta
ttggtacacagagttgattttccagcttcagttcgaatccatttactcatcaagatggca
aacattgagcacagactggcttctgggacgagtgagaagatccagctgagctccatgatc
gcagcgtttcaggtggcccgggacatggtggcagctgaagcctga

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