Acipenser ruthenus (sterlet): 117428397
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Entry
117428397 CDS
T07327
Symbol
thoc5
Name
(RefSeq) LOW QUALITY PROTEIN: THO complex subunit 5 homolog
KO
K13174
THO complex subunit 5
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03013
Nucleocytoplasmic transport
arut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117428397 (thoc5)
09122 Translation
03013 Nucleocytoplasmic transport
117428397 (thoc5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117428397 (thoc5)
03041 Spliceosome [BR:
arut03041
]
117428397 (thoc5)
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117428397 (thoc5)
Spliceosome [BR:
arut03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117428397 (thoc5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
YLR146W-A
Motif
Other DBs
NCBI-GeneID:
117428397
NCBI-ProteinID:
XP_034758084
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All DBs
Position
19
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AA seq
684 aa
AA seq
DB search
MSVDALKKRKPKVIRNEGGTPEGKRMRGEGDQEARVYSEEVELEMRNPAQDYTLYKQTCE
MLTRLMAEIHELKSSSSKDSAAEMEERRMQSCIHFMTLKKLNRVAHMRLKKGRDQTHEAK
QRVDALHLQLQNLLYEVMHLQKEINKCLEFKSKHEEIELVGVEEFRRDAPPEISRPEISG
ADPHQLTLCRLDWELEQRKRLAEKYKESLASKEKIMKSIEIKKEYLSSLQPRLTEIMQAS
RPVQDYLSMPFEQTQKQNEVARHLPPPLYVLLVQANAYGQACDKKLSVSIIGDVNEAKAL
SKPPEDSQDDDXSDSDAEEEQNTKRRRPTLGVQLDDKRKEMLKRHPLSVNVDLQCKDGSV
LHLFFYYLMNLDIMTVKVKVTAGTELSGAISAGELLSPESLLNCLYPGDQGTETPNPANR
YQFDKVGILMFGDYVAELGHPYTWVQNLGGLRFPTGRPEQAGPTGSSLSASHMEATMKLL
KSRLESRLALHKQFASLEHSILPVSSECQSLFPAKVVSRLIKWSTITYEEYAELPYTQQV
LEAGLVQETDLLFTALIERGTAKLQAAVVLNPRYSTVPPLFSLSLSWKGERSGRTDDNLR
AMEAEVNVFHRELRGPRPGYQLLTNQLQRLCMCLDVFLETESQDESVEGPREFPREKMCL
RTVRGPNRLKPFKFNHPQGFFNHR
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtggacgctctgaagaagaggaagcccaaggtgatccggaacgagggcggaaca
ccagaagggaagaggatgagaggagagggggaccaggaggcgcgggtgtacagtgaggag
gtggagctggagatgagaaaccctgcccaggactacactctctacaagcagacctgcgag
atgctcaccagactgatggctgagatccacgaactgaagagcagcagcagcaaggacagc
gcagccgagatggaggagcggcgcatgcagagctgcatccacttcatgacgctgaagaaa
ctgaaccgcgtggctcatatgaggcttaagaagggccgggatcaaacccatgaggcaaag
cagagagtggatgccctgcacctccagctccagaaccttctctatgaggtcatgcacctg
cagaaagagatcaacaagtgcctggagttcaagtccaagcacgaggagattgagctggtg
ggtgtggaggagttcagacgggacgcccccccagagatctcccgacccgagatctcaggt
gcagacccacaccagctcaccctgtgccgtctggactgggagctggagcagaggaagagg
ctggcagagaagtacaaggagtctctggccagcaaggagaagatcatgaagagcattgag
atcaagaaggagtatctgagcagcctgcagccccggctcaccgaaatcatgcaggcttcc
cggccagtacaggactacctgtctatgcctttcgaacagactcagaaacagaacgaggtg
gcgaggcacctgcccccacccctctacgtgctgctagtccaggccaacgcttatgggcag
gcttgtgataagaagctgtcggtctcgatcattggagatgtaaatgaagcaaaagccctc
tctaaacccccagaggactcccaggatgatgactagagtgactctgatgctgaagaggaa
caaaacactaagcgacgccggcccactctgggtgttcagctggatgataagcgcaaggag
atgctgaaacgccacccgttgtctgtcaacgttgacctccagtgcaaagatggcagtgtg
ttgcacctcttcttctattatctgatgaacctcgacatcatgacggtgaaagtgaaagtg
acggcagggactgagctgtccggggccatcagcgcaggagagcttctgagcccagagtcc
ctacttaactgtctgtaccctggggaccaaggcactgagacccccaatcctgccaaccgc
taccagtttgataaagtcgggattctgatgttcggtgactatgtggctgagctgggacac
ccttacacctgggttcagaacctgggggggctgcgattccccactggcagacccgagcag
gcaggccccacaggcagctcgctcagtgccagccacatggaggccaccatgaagctcctg
aaaagccgtctggagtcccgcctggctctgcacaagcagtttgcctccctcgagcacagc
attttgccagtgtccagcgagtgccagagtctcttcccagccaaggtggtttcaaggttg
atcaagtggagtaccatcacttacgaggagtatgcggagctgccctacacccaacaagtc
ctggaggccgggctggtacaggagactgacctcctcttcacagctctcatcgagaggggc
acagccaagctgcaggccgcggtggtcctgaaccctcgctactcgaccgtgccccccctc
tttagtctttcactcagctggaaaggagagcgcagcgggcggactgacgacaatctgcgg
gcgatggaggctgaggtgaatgtgttccaccgggagctgcgtgggccccgccccgggtac
cagctcctgaccaatcagctgcagcggctgtgcatgtgcctggacgtgtttctggagact
gagagccaggatgagagcgtggaggggccacgcgagttcccccgtgagaagatgtgtctg
cgtaccgtccgggggcccaatcggctgaagcctttcaaattcaaccacccccagggcttc
ttcaaccacagatga
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integrated database retrieval system
