KEGG   Acipenser ruthenus (sterlet): 117428996
Entry
117428996         CDS       T07327                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
arut  Acipenser ruthenus (sterlet)
Pathway
arut03018  RNA degradation
arut03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:arut00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117428996
  09123 Folding, sorting and degradation
   03018 RNA degradation
    117428996
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:arut03019]
    117428996
   03041 Spliceosome [BR:arut03041]
    117428996
Messenger RNA biogenesis [BR:arut03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     117428996
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     117428996
Spliceosome [BR:arut03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    117428996
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 117428996
NCBI-ProteinID: XP_034767903
LinkDB
Position
40
AA seq 147 aa
MLPLSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECY
IRGSTIKYLRIPDEIIDMVKEEVVSKGRGRGGMQQNKQQLQQKGRGAGGAGRGVFGGRGR
GMVGAGAGGRGQQEKKPGKPPGGKSQH
NT seq 444 nt   +upstreamnt  +downstreamnt
atgcttcccttatcattgcttaagacagcccagaaccaccccatgctggtggagttgaag
aatggggagacgtacaacgggcacctggtgagctgtgataactggatgaacattaacctg
cgggaggtcatctgcacatccagggatggtgataagttctggaggatgcctgagtgctac
atccgtggcagcaccatcaagtacctgcgcatccctgatgagatcattgacatggtgaaa
gaggaggtggtgtcaaagggcaggggtcgcggtggcatgcagcagaacaagcagcagctg
cagcagaagggccgcggggctggaggtgcaggcagaggtgtgttcggtgggcgtggccga
ggcatggtaggtgcaggtgcaggtggccgagggcaacaggagaagaaacctggcaagcct
ccaggaggaaagagccagcactga

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