Acipenser ruthenus (sterlet): 117432379
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Entry
117432379 CDS
T07327
Symbol
ighmbp2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
arut03009
]
117432379 (ighmbp2)
03012 Translation factors [BR:
arut03012
]
117432379 (ighmbp2)
Enzymes [BR:
arut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117432379 (ighmbp2)
5.6.2.5 RNA 5'-3' helicase
117432379 (ighmbp2)
Ribosome biogenesis [BR:
arut03009
]
Eukaryotic type
Other ribosome biogenesis factors
117432379 (ighmbp2)
Translation factors [BR:
arut03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117432379 (ighmbp2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
Viral_helicase1
ResIII
nSTAND3
DEAD
AAA_22
UvrD-helicase
AAA_16
Flavi_DEAD
AAA_25
AAA_18
ABC_tran
IstB_IS21
AAA
PhoH
UvrD_C_2
Motif
Other DBs
NCBI-GeneID:
117432379
NCBI-ProteinID:
XP_033910123
LinkDB
All DBs
Position
23:20741180..20764934
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AA seq
996 aa
AA seq
DB search
MAVESFVSKTLELLEEEREAEIEETRLWQENISLKELQRKGVCLLKLHIGSQKTGLYGRL
LVTFEPRKYDSSAVLCSNSFGPGDIVGLYDSVGIGPSSQLATGVVTRVTQSYLSVAFDES
SDGLSLDNEGPFNLLKLANDVTYKRLKNALNSLNQYSAGPASNLIGVLFGYSEPSPCQET
KTLDLYNSSLDESQKEAVCFSLSQKELAIIHGPPGTGKTTTVVELILQAVKLGLKILCCA
PSNVAVDNLVERLARFKAKVLRLGHPARLLESIQKYSLDAVLAHSDNTQIIADIRKDIDQ
AFAKMKKSRDKGDRSHLRSEIKTLRRELRGREETAITQILKRAEVVLATNTGASADGPLK
LLPNDYFDIVVIDECAQALEGSCWIPLLKAPKCILAGDHKQLPPTIKSHTAAAKGLSLSL
MERLIQKYGDQVVKMLTVQYRMNHAIMQWASEQMYAGRLTAHSSVEGHLLKDLPGVIPNE
ETSIPLLLIDTASCGLFELEVEDEQSKGNPGEVEIVAAHIQALSEAGIKAKDIAVIAPYN
LQVDMLRQQLSHKHPELEIKSVDGFQGREKEAVVLSLVRSNRKGEVGFLAEDRRINVAVT
RARRHLAVVCDSRTVRHHDFLKSLVDYMTEKGEVRTAFEYLDDIVPQNYTREPSQDELKE
QSKAKDPSGKPRDKKQQGSLREKDRNKSSRNNKNSSETAKPLNSRRDEAVEGMAIKDNYG
ELKARILDYLEDPNKKRLDFPPSLNSHDRMLVHQISEELGLTHESTGEGKERYITVSRPH
TFQRYSKASTEMKVQESVEKTNQEDTEEREEKEVPKATECTAKVDLKTLHLERMQREQAK
REEKAKLSHGHQATAQTKSSKKSKSASKGKESTKGADIAAAATADTDFDDLIAAVVKADS
ICGFSKCKASVRTMGQHCIHCNKYYCLSHHIPEVHGCGSKAKAHARMRISREGVLYAGSG
TKDKSIDPAKKAYMQRKLDKKLDDLATQRKTKKKEK
NT seq
2991 nt
NT seq
+upstream
nt +downstream
nt
atggctgtggagagctttgtcagcaaaacgttagaattactagaagaggagagagaggca
gagattgaagaaaccaggttatggcaggagaacatttctttaaaggagctacaacgcaaa
ggagtttgtctgctgaaacttcacatagggagtcagaaaacaggcttgtacgggcggctt
ctggtaacatttgaaccaagaaaatacgactcgtctgctgtactgtgcagcaatagtttt
gggccaggtgacatagtgggtttatatgattcagtaggaattggtccttcctcccagctt
gccactggtgttgtgactcgtgtcacgcagagctacctgtcagttgcctttgatgagtcc
agtgatggcctgagtctggacaatgagggccccttcaatctattaaagctggccaatgat
gtcacctacaagagactgaaaaatgctttgaactccttgaaccagtacagtgctggccca
gcttctaatctgattggggtcctgtttggctattcagagccaagtccttgccaggaaaca
aaaactctagacctgtataacagctctctggatgagtcgcagaaagaagcagtttgtttt
tctttgtctcagaaggaactggcaataatccatggccctcctggtacagggaaaactacc
acagtggtagagctgatactgcaggccgtcaaactgggcctaaagattctttgctgtgcc
ccatctaatgttgctgtggataacctggttgaacgtttagcaagatttaaagcaaaagtc
ctgcgtcttggccaccctgctcgtcttttggaatccattcagaaatattctttagacgcg
gttctggcacacagcgacaacactcagatcatcgcagacatccggaaagacatcgatcag
gcttttgccaaaatgaagaagtctcgtgacaaaggagacaggagccacctgcgcagcgag
atcaagaccctgcggagagagctgagggggcgtgaggagacggccatcacgcagattctc
aagagagcggaggtagtgctggcaactaatacaggtgcctctgctgatggccctctgaag
ctgctgccgaatgattacttcgacatcgttgtgattgacgagtgtgcgcaggcgctggag
gggagctgctggattccacttctcaaggcccccaagtgcatcctggctggagatcacaag
cagcttccacccaccatcaaatcacacacagccgctgcgaagggcctctctctgagctta
atggaacgtctgatacagaagtacggagaccaggttgtgaagatgctgacagtgcagtac
cgcatgaaccacgcaatcatgcagtgggcctctgaacagatgtatgctgggagactgacg
gcccactcctcagtggaaggacacttgttgaaggacttgcctggggtcattcccaatgaa
gagaccagcattcctctgctgctgatagatacggcgagctgcgggctctttgaactggaa
gtggaggacgagcagtccaaagggaatccaggggaagttgaaattgtggcagctcacata
caggcattaagtgaggctggtataaaagcaaaggatattgctgtcatcgctccttataat
ctgcaggtcgacatgctgagacaacaactttcccacaaacatcctgagctggagatcaag
tctgttgatggttttcaggggagagaaaaagaagccgtggttctgtccctagtcagatcg
aacagaaagggtgaagttgggtttctggctgaagacagaagaatcaacgtcgcggtgacc
cgagcgagacggcacctggcagtagtgtgtgactcccgcactgtacgacaccatgacttt
ctgaaatcactggtggattacatgacggagaaaggggaggtgcggactgcatttgaatac
ctagatgacattgtccctcagaactacacccgtgagccctcccaggatgaactgaaggaa
caaagcaaggccaaagacccctccggaaaaccgagggacaagaagcagcaaggaagccta
agagaaaaagaccgcaacaagagcagtaggaacaacaagaacagttctgagactgcaaag
ccgcttaactcacgaagagatgaagccgtggagggcatggcaattaaagacaattacgga
gagttaaaagccaggattttagactatcttgaagaccctaataagaaaaggctggatttc
ccaccatcgttgaactcacacgatcggatgttggtgcaccagatttcagaagaactggga
cttacacacgagagcacaggggagggcaaggagagatacatcactgtttccagaccgcac
acttttcagaggtattctaaggcaagcacagaaatgaaagtccaagaatcggtcgagaaa
accaatcaagaagatacagaagaaagggaagagaaggaagtgccaaaggctactgagtgt
acagctaaagtggacttgaagacattgcacttggaacgaatgcagagagagcaagcgaaa
agagaagagaaggctaagctgagtcacggacaccaagcaaccgcacagacaaagtcctca
aagaaatcaaaaagtgccagcaagggaaaggaatccactaaaggggctgacattgctgcc
gctgccactgctgatacagattttgacgacctcattgctgctgttgtaaaagctgatagc
atctgtggattttccaagtgcaaagccagtgtgcggacaatggggcagcactgcatacac
tgtaacaagtattattgcctcagtcaccatatcccagaggttcatggttgtggcagcaag
gctaaggcccatgcccgcatgagaatcagccgggaaggggtgctgtacgcaggcagcgga
actaaagacaaatccatagacccggcgaaaaaagcatacatgcagaggaaactggacaag
aaactagacgatttagcaacgcagaggaaaaccaaaaagaaggagaagtga
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