Acipenser ruthenus (sterlet): 117433968
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Entry
117433968 CDS
T07327
Symbol
ddx39b
Name
(RefSeq) DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03013
Nucleocytoplasmic transport
arut03015
mRNA surveillance pathway
arut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117433968 (ddx39b)
09122 Translation
03013 Nucleocytoplasmic transport
117433968 (ddx39b)
03015 mRNA surveillance pathway
117433968 (ddx39b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
arut03019
]
117433968 (ddx39b)
03041 Spliceosome [BR:
arut03041
]
117433968 (ddx39b)
Enzymes [BR:
arut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117433968 (ddx39b)
Messenger RNA biogenesis [BR:
arut03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117433968 (ddx39b)
Spliceosome [BR:
arut03041
]
Complex C
Other components
EJC/TREX
117433968 (ddx39b)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117433968 (ddx39b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_19
Motif
Other DBs
NCBI-GeneID:
117433968
NCBI-ProteinID:
XP_033912334
LinkDB
All DBs
Position
32:7372235..7383150
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AA seq
428 aa
AA seq
DB search
MAENDVDNELLDYEDDEVENAGSGDAVDLPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
HTRELAFQISKEYERFSKYMPTVKVAVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALA
RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
VALAQLLVEQNFPAIAIHRGMPQEERLARYQQFKDFQRRILVATNLFGRGMDIERVNIAF
NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKVLNDVQDRFEVNISELPDEIDI
SSYIEQTR
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atggctgagaacgacgttgacaatgagctgctggattatgaagatgacgaggtggagaac
gctgggagcggggacgctgtggacctgcctgccaagaaggacgtaaagggctcctatgtg
tccatccacagctctggcttcagggacttccttctcaaaccagagctgctcagagccatt
gtggactgcggcttcgagcacccctccgaggtacaacacgagtgtatcccgcaggctatc
ctgggtatggatgtgctgtgccaggccaagtctggaatggggaagacggctgtgtttgtg
ctggccaccctgcagcagctcgaacccgtcaccggacaggtgtctgtgctggtgatgtgt
cacacaagagagctggcattccagatcagcaaggagtacgagcgattctcaaagtacatg
cccaccgtcaaggtggctgtgttctttggcggcctgtctatcaagaaggacgaggaggtg
ctgaagaagaactgcccccacgttgtggtggggactccgggaaggatcttagcgctggca
cgcaacaagagcctcaacctgaaacacatcaaacacttcatcctggatgagtgtgataag
atgctggaacaactggacatgcgccgtgatgtccaggagattttccgcatgaccccccac
gagaagcaagtgatgatgttcagcgccaccctgagcaaggagatccgacccgtgtgtcgc
aagtttatgcaagatcccatggagatctttgtggatgatgagacgaaactgaccctgcac
gggctgcagcagtactatgtgaagctgaaagacaacgagaagaaccgcaagcttttcgac
ctgctggacgtgctcgagttcaaccaggtggtgatctttgtgaagtctgtgcagaggtgt
gtggcgctggcccagctgttagtggagcagaacttccctgccatcgccatccacagaggc
atgccccaggaggagaggcttgcccgctaccagcagttcaaggatttccagcgcaggatc
ctggtggccacaaacctgtttggtcgaggcatggacattgagagggtcaacatcgccttc
aactacgacatgcccgaggactccgacacctacctccaccgggtggcgagggcaggtcgg
ttcggtaccaagggcctggccatcaccttcgtgtcagacgagaacgatgccaaggtgctg
aacgacgtgcaggaccggtttgaagtgaacatcagcgagcttcctgacgagatcgacatc
tcctcctacattgaacagacgcgataa
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