Acipenser ruthenus (sterlet): 117434893
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Entry
117434893 CDS
T07327
Symbol
dhx8
Name
(RefSeq) ATP-dependent RNA helicase DHX8
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117434893 (dhx8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
arut03041
]
117434893 (dhx8)
Enzymes [BR:
arut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117434893 (dhx8)
Spliceosome [BR:
arut03041
]
Complex C
Other components
Step II factors
117434893 (dhx8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
GIPC1_GH2
AAA_19
nSTAND3
AAA_16
T2SSE
Cas3-like_C_2
TsaE
PhoH
Flavi_DEAD
Sigma54_activ_2
ABC_tran
Motif
Other DBs
NCBI-GeneID:
117434893
NCBI-ProteinID:
XP_033913487
LinkDB
All DBs
Position
26:20540481..20569833
Genome browser
AA seq
1206 aa
AA seq
DB search
MADGGVDELQKLEYLSLVSKVCTELDNHLGISDKDLAEFVINLAEKNPTFDSFKGELVKN
GAEFTDSLMSNLLRLIQTMRPLAKPSSSKGMEPVVKPKSEKEKLKELFPALCRPDNLHTR
ITLDDDDVKVAADAMKELEAFMPSISEEKPRSSRHRSDDGGKRKKRSRSKDRDRERDRDR
DRKRRHRSRSRSHSRSRSRSRDRGKGKSRWRSWSKSRSPSPSRERRDKDKGADRWKDKHV
DRPPPEEPTVGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVS
KGQRVKVKVLSFTGSKTSLSMKDVDQDTGEDLNPNRRRNMGGEGSEETTMRNPDRPSHMS
LVSMPEVEDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDEETGILPKVDDEED
EDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERREVKQAQR
EAEMDSIPMGLNKHWVDPLPDADGRQIAANMRGIGMMPNDIPEWKKHAFGGNKASYGKKT
QMSILEQRESLPIYKLKEQLIQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTTRGKIG
CTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDP
DLGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQYFYEAPI
FTIPGRTYPVEILYTKEPETDYLDASLITVMQIHLTEPPGDVLVFLTGQEEIDTACEILY
ERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYV
VDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLT
TNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLT
RLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAK
FHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVV
SCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDSQVVYIHPSSALFNRQPEWVVYHEL
VLTTKEYMREVTTIDPRWLVEFSPAFFKVSDPTKLSKQKKQQRLEPLYNRYEEPNAWRIS
RAFRRR
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atggccgacggtggagttgacgagctgcagaaactcgaatacctttccttggtttccaag
gtttgtactgaattggataaccatctcgggattagcgacaaagatttggctgaatttgtg
ataaacctggctgagaagaaccccacgtttgattccttcaaaggagagctggttaaaaat
ggagcagaattcacagattctcttatgagcaatttgttgcgtctcatacaaacaatgcga
cctctggcgaagccatcttcaagcaaagggatggaaccagtggttaaaccaaagtctgaa
aaagagaagctgaaggagctcttccctgccctgtgccggccagataatctgcatacaaga
attactcttgatgatgatgatgtgaaagtagcagccgatgccatgaaagagcttgaagcg
ttcatgcccagcatcagtgaagaaaaaccaagaagcagtagacaccgttctgatgatggt
ggaaagagaaagaaacggagcaggagcaaagatcgagacagagagagggacagggaccgt
gacaggaagaggcgtcaccgctcccgctcccgctcccactccaggtccaggtctcgctcc
cgggacagagggaaagggaaatctcgctggcgatcctggagcaaaagcaggagccccagc
cccagcagagagcgccgggacaaagacaagggagctgaccgctggaaagacaagcatgtg
gaccggcctcctcccgaggaacccacagtgggagacatctacaacggcaaagttaccagt
atcatgcagtttggctgcttcgtgcagctggagggactgaggaaacgatgggaaggattg
gttcacatctcggaactcagaagagaggggagagttgccaatgttgcagatgtggttagc
aaaggtcaaagggtaaaagtcaaggtgctgtcctttaccggatctaaaaccagcttaagt
atgaaggatgtagaccaggacactggtgaggacctgaaccccaacaggcgtcggaacatg
ggtggagagggcagcgaggagacaaccatgcggaacccagaccgacccagtcatatgtcc
ctagtcagcatgcctgaggtggaggacgacacgctggagcgcaaacggctcaccaagatc
tctgacccagagaaatgggagatcaaacagatgattgcagccaacgttctctctaaggaa
gagtttccagattttgatgaagagactggtattctccctaaagtcgacgacgaagaagat
gaggacctggaaattgagcttgtggaggaagagccaccgttcctgaggggacacaccaag
cagagcatggatatgagtcctgtgaagattgtaaagaatcctgatggctccctgtcccag
gcggctatgatgcagagtgcgctggcaaaggaaagaagagaggtgaaacaggcccagcgt
gaggctgagatggactccattccaatggggctcaataaacactgggtagatcccttacct
gatgctgatggcaggcagattgcagccaacatgcgaggtattgggatgatgcccaacgat
atcccggagtggaagaaacatgctttcggaggcaacaaggcatcttacggcaaaaagacg
cagatgtcaatcctcgagcagagagagagcctgccaatctacaagctgaaagagcagctc
attcaggcagtccacgataaccagattctgattgtaattggagagactgggtcaggtaag
acgacccagatcacacagtatctggcggaggctggctacaccaccagggggaagatcggc
tgtacccagcctcgacgtgtggctgccatgtctgtcgccaagagagtgtccgaggagtac
ggttgctgtttgggccaggaggtgggttacactattcgatttgaagactgtacgagccct
gagactgtcattaagtacatgacagacggtatgttgctcagagagtgcctgattgacccc
gaccttggccagtatgccatcatcatgttggacgaggcccacgagcggaccatccacact
gatgtgctctttgggctgctcaaaaagactgtgcagaagcgcactgacatgaaactgatt
gtaacgtcagccacgctggatgccgtgaagttctcacagtatttctatgaagctcccatt
ttcacaatccctggaagaacataccctgtggagatcctctacaccaaggagccagagaca
gactacctggatgccagcctcatcactgtgatgcagattcatctgactgagcctccaggt
gatgttctggttttcctgactggtcaggaggagattgacactgcctgtgagatcctgtat
gagagaatgaaatccctggggccggatgtcccagagctgatcatccttcctgtctactct
gctctacccagtgagatgcaaaccagaatatttgatccggctccgcctggcagcagaaaa
gtggttattgctacaaacattgcagagacttcattgaccattgatgggatttactacgtg
gtggatccaggatttgtaaaacagaaagtgtacaattcaaagactggaattgatcagctg
gtggtgactccaatttctcaggcccaggctaagcagagagcaggcagagctggcagaaca
ggccctgggaagtgttacaggctgtacacagaacgcgcctacagagatgaaatgctgacc
acgaacgtgcctgaaatccagagaactaacttggccagcactgtgctgtcattgaaggct
atggggatcaatgacctgctgtccttcgatttcatggacgcccccccaatggagactctg
atcactgcgatggagcagctctacacccttggtgctctggatgacgaggggctgctcaca
cgcctggggcgcaggatggctgaatttcctctggagcccatgttgtgtaaaatgctgatc
atgtccgtccatctgggctgcagtgaggaaatgctgaccatcgtctccatgctttcagtg
cagaacgtcttctacagaccaaaggacaagcaagcacttgctgaccagaaaaaggccaag
ttccaccagcctgagggagaccacctcactctactggctgtctacaactcctggaaaaac
aacaagttctccaacccctggtgttacgagaacttcatccaggctcgctccctgcgccgg
gcacaggacatccgcaagcagatgttgggcatcatggacaggcataaactggatgtggta
tcttgtggcaaagctacagtcagagtgcagaaagcaatctgcagtggtttcttcagaaat
gcagctaaaaaggaccctcaagaaggctacaggacccttattgattcacaagtagtctat
attcatccatctagcgcactttttaatagacaaccagagtgggtggtataccatgagctg
gtgctgaccacaaaggaatacatgcgagaagtgacaaccatagaccctcgttggctggtg
gagttttcaccagccttcttcaaagtgtccgatccaaccaaactcagcaagcagaagaaa
cagcagagactggagcctctgtacaaccgctacgaggagcccaatgcctggagaatctcc
agggccttcagacgccgttag
DBGET
integrated database retrieval system
