KEGG   Acipenser ruthenus (sterlet): 117434905
Entry
117434905         CDS       T07327                                 
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
arut  Acipenser ruthenus (sterlet)
Pathway
arut03420  Nucleotide excision repair
arut04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:arut00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    117434905 (ddb1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    117434905 (ddb1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:arut04121]
    117434905 (ddb1)
   03400 DNA repair and recombination proteins [BR:arut03400]
    117434905 (ddb1)
Ubiquitin system [BR:arut04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     117434905 (ddb1)
DNA repair and recombination proteins [BR:arut03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      117434905 (ddb1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      117434905 (ddb1)
SSDB
Motif
Pfam: MMS1_N CPSF_A Beta_propel
Other DBs
NCBI-GeneID: 117434905
NCBI-ProteinID: XP_034762723
LinkDB
Position
26:complement(11212876..11229665)
AA seq 1140 aa
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTPEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTTKYNACILEYKQCGDSIDILTRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRDNKELKAFNIRLEELQVIDVKFLFGCQVPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAVAPPIIKQSSVVCHHRVDPSGSRYLLGDMEGRLFMLLLEKEEQMDGSVTLKDL
RVELLGETSIADCLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVAVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDASRD
TDDMLVLSFVGQTRVLMLNGEEVEETELPGFVDNLQTFFCGNVAHKQLIQITSGSVRLVT
QESKALVSEWKEPNGKNISVASCNSSQVVVAVGRVLCYLEIQCGELKQISSTEMEHEVAC
LDITPLGDSNGVSSLCAVGLWTDISARILNLPSFNMLHKEMLGGEIIPRSILMTTFEGSH
YLLCALGDGALFYFGLDVHTGVLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLNES
PRRICYQEGSQCFGVLSSRVEVQDASGATAAVRPSASTQALSSSVSSSKLFPSSTSPHET
SFGEEIEVHSLLIVDQHTFEVLHAHQFLQNEFALSLVSCKLGKDPNIYFIVGTAMVHPEE
AEPKQGRIVVFQYCDGKLQTVAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEQIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGES
STPTQGSVLLGTVNGMIGLVTSLSESWYSLLLDLQNRLNKVIKSVGKIEHSFWRSFHTER
KTEQATGFIDGDLIESFLDLSRPKMQEVVSGLQIDDGSGMKREATVDELIKIVEELTRIH
NT seq 3423 nt   +upstreamnt  +downstreamnt
atgtcctacaactacgtggtgacggcccagaagcccaccgcggtcaatgcttgcattacg
ggtcacttcacctccgcggaggacctgaacctgctcattgcgaagaacacgcggctggag
atctacgtggtgactccagaggggcttcggccggtcaaggaggtgggcatgtacggcaag
atcgccgtcatggagctgttcagacccaagggagagagcaaagaccttctcttcatcctg
acgaccaagtacaacgcctgcatcctggagtacaagcagtgtggagacagtatcgatatc
ctgacccgcgcacacgggaacgtgcaggatcgcatcggccggccctcggagacgggaatc
atcgggatcattgacccggagtgccggatgatcgggctgcgtctgtacgacggcctcttc
aaggtgatcccgctggaccgggacaacaaggagctgaaagccttcaacatccgtctggag
gagctgcaggtcattgatgtcaagttcctgttcggctgccaggtgcccacgatctgcttc
gtctaccaggacccccagggacgtcacgtgaagacctacgaggtctccctgcgagagaag
gagttcaacaagggcccctggaagcaggagaacgtggaggcagaggcatccatggtcatc
gcagtcccagagcccttcggaggagccatcatcatcggacaggaatcgatcacctaccac
aacggagacaagtacctggccgtggccccgcccatcatcaagcaaagctcggttgtgtgt
caccaccgtgtggacccaagcggctcacgctacctgctcggggacatggagggcaggctg
ttcatgctgctgctggagaaggaggagcagatggacgggtcggtgaccctgaaggacctg
cgcgtggagctgcttggggagacgtcgatcgcggactgcctgacctacctggataacggc
gtggtgtttgtggggtcccggctcggagactctcagctggtgaagctgaacgtggacagc
aatgagcagggctcatacgtggcagtgatggagaccttcactaacctgggccccatcgtg
gatatgtgtgtggtggacctggagaggcaggggcaggggcagctggtgacctgctccgga
gcgttcaaggaaggatccctgcgaatcatccggaatgggattgggattcatgagcatgcc
agcatcgacctgcccgggatcaaagggctgtggcccctcaggtctgatgcaagccgggac
acagatgacatgctggtgctgtccttcgtggggcagactcgggtgctgatgctgaacgga
gaggaggtggaggagacggagctccctggctttgttgataaccttcagaccttcttctgt
gggaatgtggcgcacaaacagctcattcagatcacgtctggctccgtgcgcctggtcacc
caggagagcaaggccctggtgagcgagtggaaggagcccaatggcaagaacatcagcgtg
gcgtcctgcaacagcagccaggtggtggtggctgtggggagagtgctgtgctacctggag
atacagtgcggagagctcaaacagatcagctccacggagatggagcacgaagtggcctgc
ctggacatcacccctctgggggacagtaacggggtgtcctccctgtgcgcagtgggactg
tggacggacatctccgcacggatcctcaacctgccctccttcaacatgctgcacaaggag
atgctgggaggagaaatcatcccgcgctcgatcctcatgaccaccttcgaggggagtcac
tacctgctgtgcgcgctcggagacggggcgctcttctacttcggactcgacgtccacact
ggtgtgctcagtgatcgtaagaaggtgaccctgggcactcagcccacagtcctgcgcacc
ttccgatcgctctcaaccaccaacgtgttcgcctgctccgaccggcccaccgtcatctac
agcagcaaccacaagctggtgttctccaacgtcaaccttaaggaggtcaactacatgtgc
cccctgaactccgaggggtaccctgacagtctggctcttgccaataacagcaccctgaca
atcggcaccatcgatgagattcagaagctgcacattcgcaccgtgcccctcaacgagtct
ccccggcgtatctgctaccaggaggggtcccagtgttttggggtgctgtccagcagagtg
gaggtgcaggatgccagcggggcgacagcagcggtgcgacccagcgccagcacacaggcc
ctgtccagcagtgtgagctccagtaagctgttcccgagcagcacctccccccacgagact
tcgttcggagaggagatcgaggtgcacagcctgctcatagtggaccagcacacctttgag
gtgctccacgctcaccagttcctgcagaacgagtttgccctgagcctcgtctcctgcaag
ctggggaaggaccccaacatctacttcatcgtggggacagccatggtgcaccccgaggag
gctgagcccaagcaggggcgcatcgtcgtcttccagtactgcgacggtaaactgcagacc
gtagctgagaaggaggtgaagggggctgtgtactccatggtggagttcaatgggaagctg
ctggccagcatcaacagcacagtgcgtctgtacgagtggaccgcggagaaggagctgcgt
accgagtgcaaccactacaacaacattatggctctgtacctgaagaccaagggagacttc
atactggtgggggacctgatgagatcggtgctgctgctggcatacaaacccatggaggga
aacttcgagcagatcgctcgagatttcaaccccaactggatgagcgcggtggagattctc
gacgatgacaacttcctgggggcggagaacgccttcaacctgtttgtgtgtcagaaagac
agtgctgccactacggatgaggagcggcagcacctgcaggaggtgggtctgtttcacctg
ggcgagtttgtgaacgtgttctgccatggctcgctggtgatgcagaacctgggagagagc
tccacccccacgcagggctccgtgctgctcggcaccgtcaacggcatgatcggtctggtg
acctccctgtctgagagctggtacagcctcctcctggacctgcagaacagactcaacaag
gtcatcaagagcgtgggcaagatcgagcactccttctggagatcgttccacacagagcgg
aagacggagcaggcgacaggcttcatcgacggggatctgattgagagtttcctggatctc
agccggcccaagatgcaggaggtggtcagcggcttgcagatcgatgacgggagcgggatg
aagagagaggcgactgtggacgagctcattaaaatcgtggaggagctgaccagaatccac
tag

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