KEGG   Acipenser ruthenus (sterlet): 117435677
Entry
117435677         CDS       T07327                                 
Name
(RefSeq) LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 41 homolog
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
arut  Acipenser ruthenus (sterlet)
Pathway
arut04140  Autophagy - animal
arut04142  Lysosome biogenesis
arut04148  Efferocytosis
arut05132  Salmonella infection
Brite
KEGG Orthology (KO) [BR:arut00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    117435677
   04140 Autophagy - animal
    117435677
   04148 Efferocytosis
    117435677
 09160 Human Diseases
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    117435677
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:arut04131]
    117435677
Membrane trafficking [BR:arut04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    117435677
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 zf-RING_Vps41 Clathrin WD40_CDC20-Fz WD40_Prp19 VPS18_solenoid_2nd Beta-prop_HPS5 zf_RING_Vps8_fungal Vps39_1 Beta-prop_IFT140_2nd Beta-prop_RIG_2nd TPR_7 Beta-prop_EML_2 WD40_WDHD1_1st zf_RING_Vps8 TPR_YpiA Beta-prop_IFT122_1st Beta-prop_THOC3 VPS18_RING_C Pep3_Vps18 TPR_19 TPR_17 Helicase_PWI TPR_12 zf-Vps39_C zf-RING_5
Other DBs
NCBI-GeneID: 117435677
NCBI-ProteinID: XP_033914923
LinkDB
Position
4:18236664..18316785
AA seq 858 aa
MFSRCTMAEVEEQGRKSSEESSDDSEEEENEEEPKLKYERLTNGVTEILQKDAASCMTVH
DKFLALGTHFGKVFLLDIQGNVTQKFDISPVKINQISLDDSGEHLGICSEDGKVQVFGLY
TREGFHENFDCPIKIVALHPQFGRSSSKQFVTGGSKLQLYERNWLNRWKTLTLHEGEGTI
TNIKWRANLIAWANSVGVKIYDISTRQRITNVLRDNASLRPDMYPCSLCWKDSTTLVIGW
GTSVKICAVKERDPTEVRDLPSRYVEIVSAFDTEFYISGLGPLGDQLVVLYYVKEISDET
DKEFRARPRLDIIQPLPEACEEISSDALTVRHFQENECRDYGLEHSEGESLFYIISPKDI
VVAKERDQDDHIDWLLDKKKYEEALMAAEISFKNIKRHEVQKIGIAYINHLVEKGEYDVA
ARKCQKVLGKNMELWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHEFLKSDFE
GFATLIREWPGDLYNNMTVVQAVRDHLKNDPNNGTLLTTLAELYTYDQRYDRALKIYLQL
RHKDVYQLIHKHNLFSSIEDKIVLLMDFDKEKAVDMLLDNEDKISIDRVVEELKDRPELL
HVYLHKLFKRDQHKGQKYHEKQISLYAEYDRPNLLPFLRDSTHCPLEKALEICQQRNFVV
ETVFLLSRMGNSRRALQMIMEELHDVDKAIEFAKEQDDAELWEDLISYSIDKPPFITGLL
NNIGTHVDPILLIHRIKEDMEIPSLRDSLVKILQDYNLQILLREGCKKILVADSLSLLKK
MQRTQMRGVRVDEENICEACHAPILPTDTAKVFNVVVFHCRHMFHKDCLPSPSTIPAVQF
CNICSAKRRGPGSAIMEI
NT seq 2577 nt   +upstreamnt  +downstreamnt
atgttcagccgctgcactatggcggaagtagaggagcagggacgaaaatctagtgaagaa
tcctcagatgattcagaggaagaagaaaatgaagaggagccgaagctaaagtatgagcgc
ttgaccaatggtgtcactgagatactgcaaaaggatgcagccagttgcatgactgtccat
gacaagtttttggctctgggcacacattttggcaaggtgtttctattggacatacagggg
aatgtaacccagaagtttgacattagcccggtgaaaataaatcagatcagcttggatgat
agcggggagcatttgggaatttgctcggaagatggcaaggttcaggtatttgggttgtac
accagagaaggctttcatgaaaattttgactgccccattaaaatagttgcgctccacccg
cagtttggaagatcaagcagcaagcagtttgtcacaggaggcagtaagcttcaactgtat
gaaagaaactggctgaacagatggaagaccctcactctgcacgaaggagaagggactatt
actaacatcaagtggagggccaacctgattgcatgggcaaacagcgtgggtgtgaagatt
tatgacatcagcacaagacaacgaataaccaatgtgctacgggacaatgccagtcttcgc
cccgatatgtacccctgtagcctttgctggaaggatagcaccacccttgttattggctgg
ggaacctctgttaagatttgtgcagtgaaagaacgggacccaacagaagtgagagatttg
cccagtcgctacgtggaaatcgtgtctgcatttgataccgagttctacatcagtggactg
ggacccctcggagatcagctggtggtcctgtattacgtgaaggagatttctgatgagacg
gacaaggagttccgtgccagaccacgcctggacatcatccagcctcttcctgaggcctgt
gaggagatctcctctgatgccctgactgtgaggcacttccaggaaaatgagtgccgagac
tatggactagagcattcagaaggggaatccctgttctacattattagtcctaaagatatt
gttgttgccaaagaacgggaccaagatgatcatatcgactggctgcttgacaaaaagaaa
tacgaagaagctttgatggcagctgagataagcttcaagaatataaaacgccatgaagtg
cagaaaattggcattgcttacatcaatcatttagttgagaaaggagagtacgatgtagca
gcaagaaaatgtcaaaaggtgcttggcaaaaacatggaactctgggaaaatgaagtgtac
agattcaagacaatagggcagcttaaagcgattagccagtatttgcccagaggagatcta
cgactgaggcctgccatctatgaaatgatcctccacgagtttttgaagagtgactttgag
gggtttgctacactgatacgggaatggcctggcgatctgtacaacaatatgacggttgta
caggctgtacgagaccacctgaagaacgatccaaacaatgggacattgctaacaacctta
gcagaactctatacctatgaccagcgttatgacagggctctcaagatctacctgcagctg
aggcacaaagacgtctaccagctgatacataaacacaatcttttctcctccatcgaagac
aaaatcgttttgctgatggactttgataaagagaaagctgtcgatatgctgctggacaat
gaagataaaatctcaattgacagagttgtggaggaactgaaagatcgtcctgaattgctg
catgtgtacctgcataagctgttcaagcgagaccaacacaaaggacagaagtaccatgaa
aaacaaatcagcctgtatgccgagtatgatcgaccaaacctgctgccattcctgagagac
agtacccactgtcctttagaaaaggcccttgagatttgccagcagaggaactttgtggtg
gagacagtgtttttgctaagtaggatgggtaacagccgaagggccttgcagatgataatg
gaagagctgcatgacgtggacaaggcgattgagtttgcaaaagaacaggatgatgctgag
ctttgggaagacctgatctcctattccatcgacaagcctccatttatcacaggcctgcta
aacaacattgggactcacgttgatccaatcctccttatccaccgcataaaagaagacatg
gagattccaagcctgagggattcgctggtgaagattctacaggactacaacctacagatt
ctgctgcgagagggctgtaagaaaatcctggtggcagactccttgtccttgctaaagaag
atgcagagaacacagatgagaggggtccgagttgatgaagagaatatttgtgaggcatgc
catgctccgatactaccaacagatactgccaaggtcttcaatgttgtggtattccactgc
agacacatgtttcacaaagactgcctgccttctcccagcactattcctgctgttcagttc
tgtaacatctgcagtgcaaagcgcagagggcctggcagtgcaatcatggagatttga

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