Acipenser ruthenus (sterlet): 117962559
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Entry
117962559 CDS
T07327
Name
(RefSeq) collagen alpha-1(II) chain isoform X1
KO
K19719
collagen type II alpha
Organism
arut
Acipenser ruthenus (sterlet)
Pathway
arut04510
Focal adhesion
arut04512
ECM-receptor interaction
arut04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117962559
04518 Integrin signaling
117962559
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117962559
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
arut00536
]
117962559
Glycosaminoglycan binding proteins [BR:
arut00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117962559
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
117962559
NCBI-ProteinID:
XP_034769756
LinkDB
All DBs
Position
47:4743893..4776410
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AA seq
1489 aa
AA seq
DB search
MFSFVDSRTVLLLAATQLCLLAVVKCQDVEVPGSCTQDGQSYSDKDVWKPEPCRICVCDT
GTILCDEIICEDIKDCPNPEIPFGECCPICPAGETSPGGQQPGRKGQKGEPGDITDVVGP
RGPGGPMGPPGEQGPRGERGDKGDKGGPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGGN
FAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEPGEPGAAGP
LGPRGPPGPSGKPGEDGEAGKPGKSGERGSPGPQGARGFPGTPGLPGIKGHRGYPGLDGA
KGEAGAAGSKGEAGSPGENGAPGPMGPRGLPGERGRNGPSGAAGARGNDGLPGPAGPPGP
VGPAGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPSGASGNPGTDGIPGA
KGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQQGDPGIPGFKGEHGPKGEHGPAGP
QGAPGPAGEEGKRGARGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGQPGV
GGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKGGPSGAAGEDGRPGPPGPQGARGQ
PGVMGFPGPKGANGEPGKAGEKGLVGPPGLRGLSGKDGETGAAGPPGPSGPAGERGEQGP
PGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGRAGPRGERGFPGERGSPGAQGLQGP
RGLPGTPGTDGPKGATGPSGALGAQGPPGLQGMPGERGASGIAGAKGDRGDVGEKGPEGA
SGKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPPGAAGTRGAPGDRGENGPPGPAGFAGP
PGADGQPGAKGEQGEGGQKGDAGAPGPQGPSGAPGPQGPTGVSGPKGARGAQGPPGATGF
PGAAGRVGPPGPNGNPGPAGPAGSAGKDGPKGVRGDAGPPGRAGDAGLQGAAGTPGEKGE
PGEDGPPGPDGPSGPQGLAGNRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGAGDRGP
PGPVGPPGLSGPSGEPGREGNPGSDGPPGRDGSAGIKGDRGQTGPAGAPGAPGAPGSPGP
VGPTGKQGDRGESGAQGPAGPPGPAGARGMAGPQGPRGDKGEAGETGERGQKGHRGFTGL
QGLPGPPGTAGDQGAAGPAGPTGARGPPGPVGPHGKDGSNGQPGPIGPPGPRGRSGEVGP
AGPPGNAGPPGPPGPPGPGIDMSAFAGLAAPEKAPDPMRYMRADEASSSLRQHDAEVDAT
LKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGDYWIDPNQGCAVDAIKVFCNME
SGETCVYPNPASIPRKNWWTSKSADRKHVWFGETMNGGFHFSYGDDSLAPNTASIQMTFL
RLLSTEASQNLTYHCKNSIAYMDQSAGNLKKAVLLQGSNDVEIRAEGNSRFTYNVLEDGC
TKHTDRWGKTVIEYKSQKTSRLPIVDIAPLDIGGSDQEFGVDIGPVCYL
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattcaaggactgttctgcttcttgcagcgactcagctctgtcta
ttagcagttgtcaaatgtcaggacgtggaagtccctggcagctgcacgcaggacgggcag
agctatagcgataaggatgtgtggaagcccgagccgtgtcgaatctgtgtgtgtgacacc
gggaccatcctctgcgacgagatcatctgcgaggacattaaagactgccctaaccccgaa
atacctttcggagaatgctgccccatctgccccgccggcgagacctcccccggtggtcag
caacctggtcgcaagggacagaagggtgaaccaggagatataaccgatgttgtgggaccg
agaggaccaggaggcccaatgggacctccaggagaacaaggaccaagaggcgagagagga
gacaaaggtgacaaaggcggtcccggccctcgtggcagagatggtgaacccggcacccct
gggaaccccggaccccctggaccacccggacccaacggtccccctggccttggcggaaac
tttgctgctcagatggcaggaggttttgatgagaaagctggtggtgctcaaatgggcgtg
atgcaaggaccaatgggccccatgggtccccgagggccacccggccccactggcgctcct
ggcccacaaggtttccaaggcaaccccggagagcctggtgaacccggagctgctggcccc
cttggtccccgtggcccccctggaccttctggcaaacctggtgaagatggtgaagctggc
aagcctggcaaatctggagagcgtggctcacctggcccccagggtgcacgtggtttccca
ggaacccctggactccccgggatcaaaggtcacagaggttacccaggtctagacggggcg
aagggagaggctggagctgcaggctcaaagggtgaagctggttctcctggtgagaatgga
gctcccggtcccatgggtccacgcggtcttcccggcgagagagggcgtaatggaccttct
ggtgctgctggtgctcgtggtaacgacggtctgcctggtcccgctggtcctcccggcccc
gtgggtcccgctggtgcccctggcttccccggatctccaggttctaagggtgaagctggt
cccacaggtgcacgtggtcccgaaggagctcagggcccaagaggcgagtctggtaccccc
ggctctccgggcccctccggcgcttctggtaaccccggtactgatgggatccccggagct
aaaggttcagctggtgctcctggtattgctggtgctcctggcttccccggaccacgtgga
cccccaggacctcagggtgcaactgggcctctcgggccaaaaggtcaacagggtgacccc
ggtattccaggattcaagggtgaacacggtcccaaaggcgagcacggccctgctggtcct
caaggtgcccccggcccggctggagaggaaggaaagagaggcgcccgaggagagcctggc
gctgccggcccactcggaccccccggagagagaggtgctcccggtaaccgtggtttccca
ggtcaagatggtcttgcaggtcccaagggtgcccctggcgagcgtggtcagcccggtgtt
ggcggtcccaaaggtgcaaacggtgatcccggccgccccggagagcctggtctgcccggt
gccagaggtcttactggtcgccctggtgatgctggtcctcaaggcaaaggtggtccatct
ggtgccgctggtgaggatggtagaccaggaccccccggcccccagggtgcccgcggtcag
cctggtgttatgggattccccggacctaaaggagccaacggtgagcccggaaaggctggc
gagaagggattggttggccctccaggtctaagaggtctgtctggtaaagatggtgagacc
ggagctgcaggacccccaggcccgtctggcccagctggcgagagaggagagcaaggtccc
ccaggtccttccggattccagggtctgcccggacctcccggccccccaggtgaaggtggc
aaaccaggtgaccagggtgttcccggagaagctggtgctgcaggcagagctggtcccaga
ggcgagcgtggtttccctggcgagcgtggatctccaggtgctcagggtcttcagggaccc
cgaggtctgccaggaactcccggaactgacggccccaagggtgcgaccggcccatctggt
gcactaggagcccagggaccccccggcctgcagggaatgcccggtgagagaggcgcttct
gggattgccggcgccaagggtgacagaggtgacgttggtgagaagggacccgagggagct
tccggtaaagatggttcacgaggtctgaccggtccaattggtccccccggcccagctggt
cctaatggcgagaagggtgaatctggtccctctggtcctcccggagctgctggaacccgc
ggtgctcctggtgaccgtggtgagaatggtccccctggccctgctggatttgctggtccc
cctggtgctgatggtcagcctggtgctaaaggagagcaaggagaaggtggacagaaggga
gatgcaggtgcccccggcccacagggtccttctggagctcctggcccacagggcccaact
ggcgtgtccggacctaaaggtgcccgtggtgcccagggacctcctggtgcaactggtttc
cctggtgctgctggcagagttggtcctcccggccccaacggtaaccccggacctgctggt
cctgctggatctgctggtaaagatggccccaagggcgtgcgtggcgacgcgggtcccccc
ggtcgtgctggagatgctggtctgcagggtgccgctggaacccctggagagaagggcgag
cctggcgaggatggtccccctggtcccgatggcccctccggtcctcagggtctggctggc
aatcgtggtattgttggtcttcccggacagcgtggtgagagaggcttccccggacttccc
ggcccatctggtgaacctggcaaacaaggagctcctggtggtgctggagaccggggaccc
cctggacctgtcggacccccaggtctgtctggaccttccggagaacctggcagagagggc
aaccctggatcggatggtcctccaggtagagatggttccgctggcatcaagggtgaccgt
ggtcagacaggcccagctggtgctcccggtgcccctggcgccccaggatcccccggaccc
gttggcccaactggcaaacaaggagacagaggagagtctggcgcacaaggacctgctgga
cctcctggccccgctggcgctagaggaatggctggaccccaaggaccccgtggagacaag
ggtgaggctggagagactggagagagaggacagaagggtcaccgtggcttcactggcctg
cagggtcttcccggacctccaggtactgctggagaccaaggtgctgctggtcctgctggc
ccaactggtgcaagaggcccacccggccccgtcggtccccatggtaaggacggttctaac
ggccagccaggtcctattggcccacctggtcctcgtggtcgttctggagaagttggccca
gctggtccccctggtaatgccggaccccctggcccccctggtcctcccggccccggaatc
gacatgtctgccttcgccgggctcgccgctcccgagaaagccccggatcccatgaggtac
atgcgggccgacgaggcctccagctccctgaggcagcacgacgccgaggtcgacgccacc
ctcaaatccctcaacaaccagatcgaaaacatccgcagccccgagggctccaagaagaac
ccagcccgtacctgcagagacctgaaactgtgccaccccgactggaagagcggagactac
tggatcgatcccaaccagggctgcgcggtcgatgccatcaaggtgttctgcaacatggag
agcggggagacctgcgtgtaccccaacccagccagcatcccccgcaagaactggtggacc
agcaagagcgcggaccgcaaacacgtctggttcggagagaccatgaatggaggattccat
ttcagctatggtgatgacagcctggcccccaacactgccagcatccagatgacgttcctg
agactgctgtccacagaggcttcccagaacctcacctaccactgcaagaacagcatcgcc
tacatggaccagagcgccggcaacctgaagaaggccgtcctgctgcagggctccaacgac
gtggagatcagagccgaggggaacagccgcttcacctacaacgtgctggaggacggctgc
acgaaacacactgaccgatggggcaagacggtaatcgagtacaaatcccagaagacgtcc
cgcctgcccattgtggacattgcacctctagatatcggagggtcagaccaggaatttggc
gtcgacattggcccagtctgctacttgtaa
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