Acipenser ruthenus (sterlet): 117962929
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Entry
117962929 CDS
T07327
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
arut
Acipenser ruthenus (sterlet)
Brite
KEGG Orthology (KO) [BR:
arut00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
arut03021
]
117962929
Enzymes [BR:
arut01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117962929
5.6.2.5 RNA 5'-3' helicase
117962929
Transcription machinery [BR:
arut03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117962929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
AAA_19
AAA_30
Viral_helicase1
ResIII
UvrD-helicase
AAA_22
AAA_16
T2SSE
Zeta_toxin
SLFN-g3_helicase
PTP-SAK
UvrD_C_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
117962929
NCBI-ProteinID:
XP_034765085
LinkDB
All DBs
Position
30:complement(13901771..13923141)
Genome browser
AA seq
2551 aa
AA seq
DB search
MSTCRWCTPGGSDATDFLRQYASGSLLSKEEKAANEDLCFCLECVVEYHRAREELPSLHK
CLWKLETSRLLDHFXKSLKEEVGEEDDLFIVEDDQEIQIHGITGPEFENNLRVPLLEILK
YPYLLVHPKISELCVEALCRMEKSSSFQVFDKHSGIYLLLVHPDETVRKWAIRTARSLGK
VDRDDFYDLQDVFSCMFKVIELDLFLNSDIYSSSVMEEGKLILLPPHLYDSTNYKDYWLG
ICMLLTVLDSQAMDSLLLGPDKQNDLMHSILNTMEKSAPDEGLDPFWPALQCFMVILDRL
GSKVWGQLIDPTQAFQTIIGSRSYNQEIENMRRNTTGPKIKVEPDQDENMVTCSQIVYDC
NTKKQNKDTGSRSALSTEHCSIMYEEMQSLVNVLQSDMGQEMRVHNSTFLWFIPFVQSVM
DLKDLSIVYTGEIIHHLCAEIKDLINGRVQQCDKVTEFFILILVFVIELHRNKNCMNLLW
FSSQKWVEVLVKCATLSSWTSSHSCSTRVSSTTSSSMHPQVTNVVPQACIQLIRSLLREG
CQLNPQSTCKQFLDKLNLQLRKGVMPGWDLSHLAIQDLQVCLRQLVKFMKDKKPALETGT
GIRGEKVVMGEETSRLVGIEEGKESRSPFECKSGLSRPALSTGEKDGGPLCFQSNLNVKE
ERPWDDAYFAKPSGTIEVQDRVEDSNREPKIAQMLQIKKEKDLCTDVCGMDSNSDTCSVK
RASDIKGLESKMEQNISSKLKPDLGRMQDLKSRLAKVFIDPSLIKKEKNDGSPGSKKQML
GHNISKEKRMGFSLEPTEKKEMDAPECLKSFPVKIKQENTETNKQLSIVQCFDTESGSDN
EDDVPLMVIKSNLEKKRMFSKEVNQNPLTDSQVDRDLGLLSLTALSKSFSFPLDSSQESS
VRQLPDRIERKVRSNVRNIQKAQEEDDLIILENPVIIISDSDSAKEENDLHVGKNKVQQS
AKPEPSDVKIAEKDLDRGSSPPLYNEYDSQLFEFETEDEVFSAWDDSQMDNALASPETEQ
ESLESSKKRNSSLEKSPDLNGMYNDWGYDTDYVPDDVIEKAAEQAEKQLMREQEAVHVEN
TSEVSTPVFYGVKRKSSTDISPDMGSKSGRQPDKNAMPSTSSTPCLTLAQKLANKRESCG
NKVTSKISNFVTSPKAAQNERKATTAASSRSTAVSCKTTSPAIVPPKKVRQREEPKSTAE
KLGLKKKERKAFDLSQRSLDCVAELRNYGQHLQVEKQKRRRKSKKCQNTMLISPQKLVVK
GNKKLLASQDLQFFRQSRPKKSEQVREPSKSNASEVTRPPEREGADRDGDDFFHLTRPDP
ASAEINDPEVQSSEKPGAAAGSHTVYLSKTFHQRGHGFPQMECQKIVVMESKEEIKPNDV
NEDSKHDDDDDDDQMCLTQMDPIDMDLCSQLEYANDYFAGTQRDPVDMEIDEPEMKLDNI
AAVCSAAAEILKSTSSKPKDDHLFLKPGMPLSLIKIAKPSTTKIYTPSSRSATLAQELDN
PTKTPKAGLRNKLCPMLPPRKPSVPPPECRQPALPKQPAPISSYKHPSRDVSQVKRAPVD
VRPMSSVVQQPPKNISSSQQYDLSFLIQQILEWNHEMFENFSQFGTPDNLCTFPLKEVPE
KFSSFDEYFATFYPLLMVNTFEELVQEWQKNMKSRKGIEKMLNLNGIEYQNRVSCASFSV
PLHKSEVDRQQYPKEDDLVFLWLPQHVHAYTSEEREVMEPVAHFGCVSRSNVSAAGQNDS
KAILYITIKTRGNVSAVHDQPVKCVVIGSLISTLRAFKALYSLRNNMMARAILGPHVSFF
RPGQENKVVNLSILEYNDEQQKAINSAIAMVKQPQRTPKICLIHGPPGTGKTKTIVGLLE
SIFSEDQENSIPVENRRLKGRKPRVLLCAPSNAAVDHLMKKIILDFKEKSRDHKNPLGNC
GDINLVRLGMEKAISKDLLGFSLDNQTKIRTQRGQTVQDTNIYRRKEDLDQQIDNLSRQC
AMHQKVREKFQQLTDEKCRLLREREQLGRQLKETRSRKQEVQARVLQDAHVICCTLSTSG
SILLESAFRRLGHDPFSCVIVDEAGQATEMETLIPLTYRCPALVLVGDPEQLPPTVISQK
AREKRYDQSLMARLWKCLHRETKQNPGIQTPINFLSTQYRMHPDICEFPSKYIYKRALKT
DGDTAEKRCGTSWPFQPYRLFDVTDGYETKAGESFHNDQEVKLVMQLIKLIVEKQKGRVG
VITHYSAQKQRIKDCINREGSKLFQFVEVDTVDGFQGREKDCIIVSCVRASNTQGSIGFL
GNRQRLNVTITRAKCSLFILGHLKTLMDHRDWGALIQDAHKRGTIIKTREKDYKTDAVQI
FKPEPGLLRSFSYPPVESRLPSKPVVVQTVATASNDKPASRVLAPTLPAANNPTQVTRRR
ASDTQGSLLAQPPVPAKPSTSERPRDPRLSSRAKEEASKEKNQPSNNKATAKGPQPSVST
TSHPNSRVSGANNSTISYTAGNTPSARPPPPSAYKNDQDYRHPSRNGEGSRSGPDDHRKD
TQSSSGQHNRLPQKRPSNASCTHPLAKRKSR
NT seq
7656 nt
NT seq
+upstream
nt +downstream
nt
atgagcacatgtcgctggtgcacccctggtggctctgatgccactgactttctgcgacag
tacgcttctgggtcccttttgtcaaaggaggaaaaagctgccaatgaagacctctgcttc
tgcctggagtgtgtggtggagtatcacagagccagagaggagctaccatccctgcacaag
tgcctgtggaagttggagacttcccgactgcttgatcactttngaaagtcattgaaagaa
gaggtgggggaggaggatgatttgtttatagtggaagatgaccaagagatccaaatccat
ggaatcacagggcctgaattcgagaataatctacgggttccactgctggagatattgaag
tacccctatttgttggtacaccccaaaatcagtgagttatgtgtagaggctctttgtagg
atggaaaagtccagttccttccaggtctttgataaacattctgggatttacctccttcta
gtacaccctgatgaaactgtgcgcaaatgggcgatccgcactgccaggtccctgggtaag
gtggaccgggatgatttttacgaccttcaggacgtgttttcctgcatgtttaaggttatt
gagctggacctttttctcaactccgatatatacagctccagcgtcatggaagaaggcaag
ctgatcctgcttccacctcacctctatgactccactaactacaaggattactggctaggt
atctgcatgcttttaacagtattggattctcaggctatggactctttgctgcttggtcct
gacaaacagaatgatctcatgcattcaattctcaacaccatggagaagagtgctccagat
gagggtttagatcctttttggccggcattgcagtgttttatggtgattttggatcggctc
ggctctaaagtttggggccaactgattgacccaactcaggcatttcagacaattattgga
agccgcagttacaaccaagagattgaaaatatgcgcagaaacacaactggacccaaaatc
aaggttgaaccagaccaagatgaaaacatggtgacatgtagtcaaattgtctatgactgt
aacaccaagaaacaaaacaaggacactggtagcagaagtgccttaagtactgaacattgc
tcaatcatgtatgaagaaatgcaatctctagtgaatgtacttcagtctgatatggggcag
gaaatgcgcgtgcacaacagcactttcttatggtttatcccatttgtacagtctgtgatg
gacctcaaagaccttagcattgtctatactggagaaatcattcaccacctgtgtgctgaa
atcaaggatcttataaacggacgggtgcaacagtgtgataaagtaacagaatttttcatc
ctcattctggtttttgtcattgaactccaccgtaataaaaactgcatgaatctcttgtgg
ttcagttcacagaaatgggttgaggtgttggtgaaatgtgccacactttctagttggact
tctagtcatagctgttcaacaagagtgtcttcaacaacttcctcgtccatgcatcctcaa
gttaccaatgtggttcctcaagcctgtattcagttgatacgtagcctccttagggaagga
tgccagctgaatccacagagcacctgcaagcagtttttggacaagctgaacttgcagtta
cgcaagggtgtcatgccaggatgggatctcagtcacctggcgatacaagatctacaagtt
tgtctgagacagcttgttaaattcatgaaagataagaaaccggctttggagaccggtaca
ggcatcagaggagaaaaggttgtaatgggtgaagaaactagtagactagtgggaatagaa
gaaggaaaagagagcagaagtccttttgaatgcaagagcggactatctcgtccagcattg
tctacaggggagaaagatggtgggcctttgtgctttcagagtaaccttaatgtgaaggag
gaaaggccttgggatgatgcatattttgcgaagccttctggtaccattgaagttcaggat
cgagttgaagattccaacagagaacctaaaatagcacaaatgctgcaaataaaaaaagaa
aaggacttgtgtactgatgtgtgtggaatggatagtaattcggatacctgctctgtgaaa
agggcctcggacataaagggtttagaatcaaagatggaacaaaatatttcaagtaagctt
aaacctgacctgggtcggatgcaggatctgaaatccagactcgcaaaggtgtttatagat
ccgtcccttattaagaaggaaaaaaacgatgggtctcctgggtccaaaaaacaaatgctc
ggtcacaatatctccaaagaaaagcgaatgggcttttcactagagccaacagaaaaaaaa
gaaatggatgctccagaatgcttaaaaagctttcctgtgaaaataaagcaagaaaataca
gaaactaacaagcagctgtccattgttcaatgttttgacacagaaagtggtagtgataac
gaagatgatgtcccgctcatggttataaagtccaatctggagaaaaagagaatgttctcc
aaggaggtcaaccaaaaccccttgaccgattcgcaggttgatagagatctgggtttgctt
tctttaactgccctttcaaaaagtttcagtttccctcttgattcaagtcaggagtcttca
gtgcggcagctgccagacaggatagaaaggaaagtgaggagtaatgtgagaaatatccag
aaagcacaggaagaggatgatctaattatattggaaaatccagtaattataatttctgat
tcagactctgcaaaggaagaaaatgacctacatgttggcaaaaataaagtacagcaaagt
gcaaagcctgagccttctgatgtcaaaattgcagagaaagatttggacagaggaagttct
ccacctctttacaatgagtacgattcccagttgtttgagtttgaaactgaagacgaagtg
ttttctgcctgggatgactctcaaatggacaatgcactggcatctccagaaactgagcaa
gaaagtcttgaaagctctaaaaaaaggaattcatcccttgagaagagtccagatctgaat
ggtatgtacaacgattgggggtatgacacagattatgtcccagatgacgtgatagaaaaa
gcagcagagcaagctgaaaaacagctaatgagggagcaggaagctgtccatgtggagaac
acaagtgaggttagcacgccggtgttctatggggttaaacgcaagtcttcaacggatatt
tcaccagacatgggcagtaagagtgggaggcaacctgataaaaatgccatgccatccacc
tcatccactccctgcttaacattagctcaaaaactggccaataaaagggaatcttgtgga
aacaaagtaacatcaaaaataagtaattttgttacatctccgaaagccgcacaaaatgaa
agaaaagcaacaactgccgcatcatcaaggtcaactgctgtgtcctgcaagactacttct
cctgctatagttccccccaaaaaagtacgtcagcgagaagagcccaagtctactgctgag
aagcttggtctgaagaagaaagagcgcaaagcatttgatctgtcgcagagatcattagac
tgcgtggctgagctgcggaactacggtcaacatttgcaggttgagaagcagaagaggaga
aggaagagcaaaaaatgtcagaacacaatgctgatttcccctcagaagctggtggttaaa
gggaataaaaagttacttgcttctcaggaccttcagttcttcagacagagtagacctaaa
aaatcagaacaggtcagagagccttcaaaaagcaatgcatctgaggtgactcggccacct
gaaagagaaggggccgacagagatggcgatgattttttccatttgactcggcctgaccca
gctagtgcagaaatcaatgatccagaggtgcagtcatctgaaaaaccaggtgctgctgca
ggaagtcatacagtctatctatcaaaaaccttccaccaaaggggtcatggctttccacag
atggagtgccaaaagatagtggtaatggaaagtaaggaagaaattaaaccaaatgatgtg
aatgaagatagcaaacatgatgatgatgatgatgatgatcagatgtgtttgacacagatg
gatccgattgacatggatctatgctcacagttggaatatgcaaacgactattttgcaggg
acccaaagagatcccgtggacatggaaattgatgagccagaaatgaaattagataacatt
gcagcagtttgttctgcggcagcagaaattctgaaatccacatcatctaaacccaaagat
gatcacctattccttaagccaggaatgcccctgtctttaataaaaatcgcaaaaccttcc
acaactaaaatatatacacccagctcaagaagtgctaccttggcacaagagctggataac
ccaacaaaaactccaaaagctggtttaagaaataagctttgcccaatgttgcctccaaga
aagccaagtgtacccccacctgaatgtagacagcctgctcttccaaagcagcctgccccc
atcagttcatataaacatccgagcagggatgttagtcaggtgaagcgggcgcctgtagat
gttaggccaatgtcttctgtagttcagcaacctcccaagaacatttcttcaagccaacag
tatgacctgtctttcttgatccagcaaattctggaatggaaccatgaaatgtttgaaaac
ttctcccagtttggaaccccagataatctgtgtacatttcccttgaaagaggtcccagag
aaattcagttcctttgacgagtactttgccacgttttatccgttgctgatggtgaatact
tttgaggagttggtacaggagtggcagaagaatatgaaatctcgaaaggggattgagaag
atgttgaacctgaatggcattgaatatcagaatagagtcagctgtgcaagtttttcagtc
cccctacataaatctgaggtggacaggcagcagtaccccaaggaggacgacttggtcttt
ctgtggctaccgcagcatgtccatgcctacacgtccgaggagagagaagtgatggaacca
gtcgcacactttggctgtgtctctagaagtaatgtttctgcagcaggccaaaatgactcc
aaagcaattctctacatcaccattaaaactcgtgggaatgtttctgctgtgcacgaccag
ccagtgaagtgcgtggtgattggatctctgatcagcaccttgcgagcgtttaaagccctc
tactccctgagaaacaatatgatggccagagcaatccttggaccccatgtctcttttttc
aggccaggacaggaaaataaagttgttaatttgagcattctggaatacaatgatgaacaa
caaaaggccataaactctgcaatagccatggtcaagcagcctcaaaggactcccaaaata
tgcctaatccacggaccaccgggaacgggcaaaacaaagacaattgtaggacttcttgaa
agcatcttctccgaggatcaggagaattcaatcccggtggagaacaggcgtttaaagggc
aggaagcccagggttcttctttgtgcaccatccaacgctgcagttgaccatcttatgaag
aagattattttggattttaaggagaaaagcagggaccataagaacccattaggtaactgt
ggggatattaatttggtacgcctcggaatggaaaaggccatttcaaaagacctgctgggg
ttcagcctggataaccagactaaaatccgaacacagagggggcaaactgtacaagacaca
aatatttacagacgcaaggaagatctggatcagcagattgacaatctgtcacgccagtgt
gccatgcatcagaaagtcagagaaaagtttcaacaactgacagatgaaaagtgcagattg
cttagagagagagagcaacttggacgacagctaaaagagactcgaagcagaaaacaagaa
gtccaagccagagtcttgcaggatgcccatgttatctgctgcacgctgagtaccagtgga
agcattctgttggagtctgccttcaggagactggggcatgatccattcagttgtgtcata
gtggatgaggcagggcaggccacagagatggagactctgattccactgacctatcgttgt
ccggcgttggtcctggtcggggacccagaacagctgccgcccaccgtcatctcgcagaaa
gccagagagaaaaggtatgaccagtcgctgatggctcgtctgtggaagtgcctgcacaga
gaaaccaaacagaacccagggattcagactcccatcaatttcctcagcacgcagtacagg
atgcaccctgatatctgtgagttcccatccaaatacatctacaagagggcactgaaaacc
gatggcgatactgcagaaaaaagatgtgggacaagctggcctttccagccatacaggctc
ttcgatgttacggatggctatgagaccaaagcaggagaatcctttcacaatgatcaggag
gtgaagcttgtgatgcagctgattaaactcattgtagaaaagcagaagggccgtgttgga
gtcatcacccactacagtgcgcagaagcaaaggatcaaggactgtatcaacagagaaggc
agtaaactgttccaatttgtggaagtggacactgtggatggttttcagggtcgtgaaaaa
gattgcattattgtgtcttgtgtcagagccagcaatactcagggttcaattgggtttcta
ggtaatcgtcagcgattaaatgtcacaattacgcgagcaaagtgtagtttgttcattctg
gggcatttgaagacgctgatggatcacagggactggggtgctctgatccaggatgctcac
aaaagaggtactattataaagactcgggagaaagactataaaaccgacgcagtgcagatt
ttcaaacccgagcctgggctgctacgaagcttctcctatccaccagtggaatccagattg
ccttctaaacctgtagtagtgcagacagtggctactgccagtaatgacaagcctgcttct
agggtcctggcaccaaccttgccagctgcaaacaatcctacacaagtaacaaggcggcga
gcttcagacactcagggctctttgctggcccaaccccctgttccagcaaagccttctact
tcagaaaggcccagagaccctcgattgtccagccgggcaaaggaagaagcctcgaaggag
aaaaaccagccttcaaataacaaggcaactgccaaaggcccccagccctctgtgtcaaca
actagtcaccccaactccagagttagtggtgctaataacagtaccatcagctacacagct
ggaaacactccctctgcaaggccccctcctccctctgcttataaaaatgaccaggactac
agacacccctccaggaatggagagggaagcaggtcaggacccgatgaccatcggaaagac
acacagagtagcagtggccaacataaccgactccctcagaaaagaccatcaaatgcaagt
tgtacacatccgttggcaaagcgcaaaagtcggtga
DBGET
integrated database retrieval system
