KEGG   Acipenser ruthenus (sterlet): 117964136
Entry
117964136         CDS       T07327                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
arut  Acipenser ruthenus (sterlet)
Pathway
arut03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:arut00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117964136
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:arut03041]
    117964136
Spliceosome [BR:arut03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    117964136
 Complex C
   U5 SnRNP specific factors
    117964136
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_TEP1_2nd EIF3I WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_EML NBCH_WD40 WDR90_beta-prop_4th Beta-prop_EIPR1 ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_IFT122_1st WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 WD40_RFWD3 Beta-prop_Vps41 Beta-prop_IFT140_1st eIF2A Beta-prop_WDR19_1st Beta-prop_WDR75_2nd Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_IFT140_2nd WDR54 WD40_like
Other DBs
NCBI-GeneID: 117964136
NCBI-ProteinID: XP_034762586
LinkDB
Position
25:complement(1292437..1303586)
AA seq 350 aa
MIEPKKRKGPGPNEMALVPALKKPRSEMAAAPGQQQLMPMGPPRSSSLQAPIMLLCGHEG
EVHCCKFHPNGATLASAGFDRLILMWNVYGDCDNFATLKGHSGAVMELHYNTDGSLLFSA
STDKTVGVWDSETGERMKRLKGHTSFVNSCYPARRGPQVVCTGSDDGTVKLWDIRKKAAV
HTFQNTYQVLSVTFNDTSDQIISGGIDNDIKVWDLRQNKLIYTMRGHADSLTGLSLSSEG
SYLLSNSMDNTVRIWDVRPFAPKERCLKIFQGSIHNFEKNLLRCSWSPDGSKIAAGSADR
FVYVWDTTSRRILYKLPGHAGSVNEVAFHPEEPIVLSGSSDKRLYIGEIQ
NT seq 1053 nt   +upstreamnt  +downstreamnt
atgattgagcccaagaaaaggaaaggccccgggcccaacgagatggccctggttccggcc
ttgaagaagccgcgcagtgagatggcggcggctccgggacagcagcagctcatgccgatg
ggcccccccaggagctccagtttgcaggcaccaatcatgcttctctgtggacacgaggga
gaagttcactgctgcaagtttcatcccaatggtgctaccctggcatcagctggattcgac
agactcatcttgatgtggaatgtctatggtgactgtgataacttcgccacactcaagggc
cacagcggggctgtcatggagttgcactacaatacagatggcagcttgctgttctcagct
tccacagataagacggtgggggtgtgggacagcgagacgggtgagaggatgaagaggctg
aagggacacacgtcgttcgtgaactcctgctacccggccaggcgcggcccacaggtcgtc
tgcacaggcagcgacgacggcacagttaaactttgggatatccgtaagaaagctgctgtg
cacacgttccagaacacctaccaggtcctctccgtcacattcaacgacaccagcgaccag
atcatatccggagggattgacaatgacatcaaggtgtgggacctgcgacagaacaagctg
atttacacgatgcgcggccacgctgactctctgaccggactcagcctgagctcagagggc
tcctacctgctctccaactccatggacaacacagttcgtatctgggacgtacgccctttt
gcaccaaaagaaaggtgtctgaagatattccaaggaagcattcacaactttgaaaagaac
cttctaagatgttcttggtctccagatgggagcaaaatagcagcagggtctgcagacagg
tttgtgtacgtgtgggacaccacttcccggaggatcctctacaagctgcctggtcacgcc
ggctctgtgaacgaggtcgccttccaccctgaggagcctattgttctttcgggatccagt
gacaaaagactgtacataggagagatccagtag

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